GO	GO frequency	Topics
Interest Eliminate   |    GO:2000280--regulation of root development	1	61   (0, 2, 3, 13, 14, 15, 20, 21, 23, 24, 25, 26, 27, 30, 31, 33, 34, 37, 41, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 58, 59, 60, 61, 63, 64, 66, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80, 83, 85, 89, 90, 92, 93, 95, 9, 16, 18, 43, 68, 71, 98)
Interest Eliminate   |    GO:0006611--protein export from nucleus	1	58   (0, 2, 3, 13, 14, 15, 17, 20, 21, 23, 24, 25, 26, 27, 30, 33, 34, 37, 39, 41, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 57, 58, 59, 60, 61, 63, 64, 66, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80, 83, 85, 86, 89, 90, 92, 93, 95, 36)
Interest Eliminate   |    GO:0006629--lipid metabolic process	1	58   (0, 2, 3, 13, 14, 15, 20, 21, 23, 24, 25, 26, 27, 30, 31, 33, 34, 37, 39, 41, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 58, 59, 60, 61, 63, 64, 66, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80, 83, 85, 86, 89, 90, 92, 93, 95, 43, 71)
Interest Eliminate   |    GO:0006952--defense response	5	56   (0, 2, 3, 4, 13, 14, 15, 20, 21, 23, 24, 25, 26, 27, 29, 30, 33, 34, 37, 41, 44, 48, 49, 50, 51, 52, 53, 54, 55, 57, 58, 59, 60, 61, 63, 64, 66, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80, 83, 85, 89, 90, 92, 93, 95, 35)
Interest Eliminate   |    GO:0006637--acyl-coa metabolic process	1	55   (0, 2, 3, 13, 14, 15, 20, 21, 23, 24, 25, 26, 27, 30, 33, 34, 37, 41, 44, 46, 48, 49, 50, 51, 52, 53, 54, 55, 57, 58, 59, 60, 61, 63, 64, 66, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80, 83, 85, 89, 90, 92, 93, 95, 35)
Interest Eliminate   |    GO:0005524--atp binding	12	7   (4, 6, 10, 11, 29, 73, 87)
Interest Eliminate   |    GO:0003723--rna binding	12	6   (82, 86, 16, 18, 45, 68)
Interest Eliminate   |    GO:0005886--plasma membrane	10	6   (4, 11, 31, 9, 22, 40)
Interest Eliminate   |    GO:0009507--chloroplast	11	5   (5, 12, 39, 1, 43)
Interest Eliminate   |    GO:0005794--golgi apparatus	5	4   (17, 47, 81, 40)
Interest Eliminate   |    GO:0003677--dna binding	6	3   (38, 65, 96)
Interest Eliminate   |    GO:0004674--protein serine/threonine kinase activity	3	3   (6, 11, 88)
Interest Eliminate   |    GO:0005654--nucleoplasm	4	3   (8, 18, 56)
Interest Eliminate   |    GO:0005773--vacuole	3	3   (5, 7, 31)
Interest Eliminate   |    GO:0005829--cytosol	9	3   (81, 16, 36)
Interest Eliminate   |    GO:0006351--transcription, dna-templated	10	3   (65, 82, 94)
Interest Eliminate   |    GO:0006468--protein phosphorylation	4	3   (6, 11, 86)
Interest Eliminate   |    GO:0006974--cellular response to dna damage stimulus	1	3   (31, 9, 16)
Interest Eliminate   |    GO:0016301--kinase activity	5	3   (87, 88, 22)
Interest Eliminate   |    GO:0046872--metal ion binding	7	3   (62, 84, 99)
Interest Eliminate   |    GO:0003700--transcription factor activity, sequence-specific dna binding	4	2   (38, 96)
Interest Eliminate   |    GO:0003729--mrna binding	3	2   (16, 71)
Interest Eliminate   |    GO:0004519--endonuclease activity	2	2   (56, 68)
Interest Eliminate   |    GO:0004672--protein kinase activity	3	2   (6, 42)
Interest Eliminate   |    GO:0005739--mitochondrion	7	2   (40, 99)
Interest Eliminate   |    GO:0005774--vacuolar membrane	2	2   (7, 10)
Interest Eliminate   |    GO:0006355--regulation of transcription, dna-templated	10	2   (22, 28)
Interest Eliminate   |    GO:0008270--zinc ion binding	4	2   (7, 38)
Interest Eliminate   |    GO:0009555--pollen development	2	2   (1, 36)
Interest Eliminate   |    GO:0016042--lipid catabolic process	2	2   (32, 43)
Interest Eliminate   |    GO:0030154--cell differentiation	4	2   (82, 94)
Interest Eliminate   |    GO:0048316--seed development	2	2   (5, 39)
Interest Eliminate   |    GO:0071555--cell wall organization	2	2   (47, 98)

GO	GO frequency
Interest    Eliminate   |    GO:0005634--nucleus	43
Interest    Eliminate   |    GO:0005737--cytoplasm	19
Interest    Eliminate   |    GO:0008150--biological_process	15
Interest    Eliminate   |    GO:0005515--protein binding	12
Interest    Eliminate   |    GO:0003674--molecular_function	10
Interest    Eliminate   |    GO:0003676--nucleic acid binding	6
Interest    Eliminate   |    GO:0016021--integral component of membrane	6
Interest    Eliminate   |    GO:0005509--calcium ion binding	4
Interest    Eliminate   |    GO:0016787--hydrolase activity	3
Interest    Eliminate   |    GO:0003824--catalytic activity	2
Interest    Eliminate   |    GO:0005525--GTP binding	2
Interest    Eliminate   |    GO:0005576--extracellular region	2
Interest    Eliminate   |    GO:0005622--intracellular	2
Interest    Eliminate   |    GO:0009553--embryo sac development	2
Interest    Eliminate   |    GO:0009617--response to bacterium	2
Interest    Eliminate   |    GO:0009658--chloroplast organization	2
Interest    Eliminate   |    GO:0009846--pollen germination	2
Interest    Eliminate   |    GO:0010073--meristem maintenance	2
Interest    Eliminate   |    GO:0016020--membrane	2
Interest    Eliminate   |    GO:0016310--phosphorylation	2
Interest    Eliminate   |    GO:0045892--negative regulation of transcription, DNA-templated	2
Interest    Eliminate   |    GO:0000156--phosphorelay response regulator activity	1
Interest    Eliminate   |    GO:0004871--signal transducer activity	1
Interest    Eliminate   |    GO:0004872--receptor activity	1
Interest    Eliminate   |    GO:0005198--structural molecule activity	1
Interest    Eliminate   |    GO:0005575--cellular_component	1
Interest    Eliminate   |    GO:0005623--cell	1
Interest    Eliminate   |    GO:0006457--protein folding	1
Interest    Eliminate   |    GO:0007017--microtubule-based process	1
Interest    Eliminate   |    GO:0008152--metabolic process	1
Interest    Eliminate   |    GO:0008289--lipid binding	1
Interest    Eliminate   |    GO:0016740--transferase activity	1
Interest    Eliminate   |    GO:0019898--extrinsic component of membrane	1
Interest    Eliminate   |    GO:0030246--carbohydrate binding	1
Interest    Eliminate   |    GO:0048046--apoplast	1

All Topics (GO terms in Pink are of interest):

Topic #4: Interesting topic
Score: 0.0994GO:0006952--defense response
Score: 0.0994GO:0009814--defense response, incompatible interaction
Score: 0.0994GO:0009626--plant-type hypersensitive response
Score: 0.0994GO:0005524--atp binding
Score: 0.0994GO:0005886--plasma membrane
GO terms cooccurrence

Topic #5: Interesting topic
Score: 0.1103GO:0048316--seed development
Score: 0.1103GO:0005773--vacuole
Score: 0.1103GO:0004561--alpha-n-acetylglucosaminidase activity
Score: 0.1103GO:0009507--chloroplast
Score: 0.1103GO:0051781--positive regulation of cell division
GO terms cooccurrence

Topic #6: Interesting topic
Score: 0.0767GO:0030663--copi-coated vesicle membrane
Score: 0.0767GO:0006468--protein phosphorylation
Score: 0.0767GO:0004672--protein kinase activity
Score: 0.0767GO:0004674--protein serine/threonine kinase activity
Score: 0.0767GO:0005524--atp binding
GO terms cooccurrence

Topic #7: Interesting topic
Score: 0.1801GO:0008270--zinc ion binding
Score: 0.0905GO:0005618--cell wall
Score: 0.0905GO:0005774--vacuolar membrane
Score: 0.0905GO:0005773--vacuole
Score: 0.0905GO:0006013--mannose metabolic process
GO terms cooccurrence

Topic #8: Interesting topic
Score: 0.1103GO:0006397--mrna processing
Score: 0.1103GO:0044030--regulation of dna methylation
Score: 0.1103GO:0005654--nucleoplasm
Score: 0.1103GO:0000398--mrna splicing, via spliceosome
Score: 0.1103GO:0009793--embryo development ending in seed dormancy
GO terms cooccurrence

Topic #10: Interesting topic
Score: 0.0994GO:0005774--vacuolar membrane
Score: 0.0994GO:0000325--plant-type vacuole
Score: 0.0994GO:0005524--atp binding
Score: 0.0994GO:0055085--transmembrane transport
Score: 0.0994GO:0042626--atpase activity, coupled to transmembrane movement of substances
GO terms cooccurrence

Topic #11: Interesting topic
Score: 0.1238GO:0006468--protein phosphorylation
Score: 0.1238GO:0005524--atp binding
Score: 0.1238GO:0005886--plasma membrane
Score: 0.1238GO:0004674--protein serine/threonine kinase activity
Score: 0.1238GO:0007169--transmembrane receptor protein tyrosine kinase signaling pathway
GO terms cooccurrence

Topic #12: Interesting topic
Score: 0.0713GO:0009790--embryo development
Score: 0.0713GO:0009536--plastid
Score: 0.0713GO:0009941--chloroplast envelope
Score: 0.0713GO:0008565--protein transporter activity
Score: 0.0713GO:0009507--chloroplast
GO terms cooccurrence

Topic #19: Interesting topic
Score: 0.1238GO:0009853--photorespiration
Score: 0.1238GO:0005759--mitochondrial matrix
Score: 0.1238GO:0006730--one-carbon metabolic process
Score: 0.1238GO:0004326--tetrahydrofolylpolyglutamate synthase activity
Score: 0.1238GO:0090351--seedling development
GO terms cooccurrence

Topic #29: Interesting topic
Score: 0.2287GO:0006952--defense response
Score: 0.1527GO:0005524--atp binding
Score: 0.1527GO:0043531--adp binding
Score: 0.0767GO:2000071--regulation of defense response by callose deposition
Score: 0.0767GO:0007165--signal transduction
GO terms cooccurrence

Topic #38: Interesting topic
Score: 0.0831GO:0003677--dna binding
Score: 0.0831GO:0003700--transcription factor activity, sequence-specific dna binding
Score: 0.0831GO:0008270--zinc ion binding
Score: 0.0831GO:0009733--response to auxin
Score: 0.0831GO:0045893--positive regulation of transcription, dna-templated
GO terms cooccurrence

Topic #47: Interesting topic
Score: 0.1238GO:0005794--golgi apparatus
Score: 0.1238GO:0000139--golgi membrane
Score: 0.1238GO:0016757--transferase activity, transferring glycosyl groups
Score: 0.1238GO:0016759--cellulose synthase activity
Score: 0.1238GO:0071555--cell wall organization
GO terms cooccurrence

Topic #62: Interesting topic
Score: 0.0994GO:0009570--chloroplast stroma
Score: 0.0994GO:0004721--phosphoprotein phosphatase activity
Score: 0.0994GO:0071482--cellular response to light stimulus
Score: 0.0994GO:0010027--thylakoid membrane organization
Score: 0.0994GO:0046872--metal ion binding
GO terms cooccurrence

Topic #65: Interesting topic
Score: 0.0436GO:0000082--g1/s transition of mitotic cell cycle
Score: 0.0436GO:0003677--dna binding
Score: 0.0436GO:0046982--protein heterodimerization activity
Score: 0.0436GO:0005667--transcription factor complex
Score: 0.0436GO:0006351--transcription, dna-templated
GO terms cooccurrence

Topic #73: Interesting topic
Score: 0.1103GO:0008080--n-acetyltransferase activity
Score: 0.1103GO:0005730--nucleolus
Score: 0.1103GO:0005524--atp binding
Score: 0.1103GO:0042274--ribosomal small subunit biogenesis
Score: 0.1103GO:0051391--trna acetylation
GO terms cooccurrence

Topic #81: Interesting topic
Score: 0.1326GO:0005794--golgi apparatus
Score: 0.0666GO:0060321--acceptance of pollen
Score: 0.0666GO:0000145--exocyst
Score: 0.0666GO:0005829--cytosol
Score: 0.0666GO:0009860--pollen tube growth
GO terms cooccurrence

Topic #82: Interesting topic
Score: 0.0832GO:0006351--transcription, dna-templated
Score: 0.0418GO:0030154--cell differentiation
Score: 0.0418GO:0009911--positive regulation of flower development
Score: 0.0418GO:0009908--flower development
Score: 0.0418GO:0003723--rna binding
GO terms cooccurrence

Topic #87: Interesting topic
Score: 0.0666GO:0016301--kinase activity
Score: 0.0666GO:0009738--abscisic acid-activated signaling pathway
Score: 0.0666GO:0005524--atp binding
Score: 0.0666GO:0005516--calmodulin binding
Score: 0.0666GO:0009931--calcium-dependent protein serine/threonine kinase activity
GO terms cooccurrence

Topic #88: Interesting topic
Score: 0.0666GO:0043622--cortical microtubule organization
Score: 0.0666GO:0016301--kinase activity
Score: 0.0666GO:0004674--protein serine/threonine kinase activity
Score: 0.0666GO:0055028--cortical microtubule
Score: 0.0666GO:0009913--epidermal cell differentiation
GO terms cooccurrence

Topic #91: Interesting topic
Score: 0.0905GO:0004652--polynucleotide adenylyltransferase activity
Score: 0.0905GO:0006378--mrna polyadenylation
Score: 0.0905GO:0043631--rna polyadenylation
Score: 0.0905GO:0016779--nucleotidyltransferase activity
Score: 0.0905GO:0031123--rna 3'-end processing
GO terms cooccurrence

Topic #94: Interesting topic
Score: 0.0666GO:0030154--cell differentiation
Score: 0.0666GO:0006351--transcription, dna-templated
Score: 0.0666GO:0046983--protein dimerization activity
Score: 0.0666GO:0010048--vernalization response
Score: 0.0666GO:0045944--positive regulation of transcription from rna polymerase ii promoter
GO terms cooccurrence

Topic #96: Interesting topic
Score: 0.0589GO:0009855--determination of bilateral symmetry
Score: 0.0589GO:0010014--meristem initiation
Score: 0.0589GO:0003700--transcription factor activity, sequence-specific dna binding
Score: 0.0589GO:0080060--integument development
Score: 0.0589GO:0003677--dna binding
GO terms cooccurrence

Less interesting topics but worth to look at:

Topic #1: Interesting topic
Score: 0.0625GO:0009507--chloroplast
Score: 0.0314GO:0009555--pollen development
Score: 0.0314GO:0000785--chromatin
Score: 0.0314GO:0048366--leaf development
Score: 0.0314GO:0010468--regulation of gene expression
GO terms cooccurrence

Topic #9: Interesting topic
Score: 0.1640GO:0005886--plasma membrane
Score: 0.1640GO:0003682--chromatin binding
Score: 0.1640GO:0008536--ran gtpase binding
Score: 0.0016GO:2000280--regulation of root development
Score: 0.0016GO:0006974--cellular response to dna damage stimulus
GO terms cooccurrence

Topic #16: Interesting topic
Score: 0.4378GO:0005829--cytosol
Score: 0.1103GO:0003723--rna binding
Score: 0.1103GO:0003729--mrna binding
Score: 0.0011GO:2000280--regulation of root development
Score: 0.0011GO:0006974--cellular response to dna damage stimulus
GO terms cooccurrence

Topic #18: Interesting topic
Score: 0.4378GO:0003723--rna binding
Score: 0.1103GO:0005654--nucleoplasm
Score: 0.1103GO:0016973--poly(a)+ mrna export from nucleus
Score: 0.0011GO:2000280--regulation of root development
Score: 0.0011GO:0006810--transport
GO terms cooccurrence

Topic #22: Interesting topic
Score: 0.1527GO:0016301--kinase activity
Score: 0.1527GO:0005886--plasma membrane
Score: 0.0767GO:0009909--regulation of flower development
Score: 0.0767GO:0016592--mediator complex
Score: 0.0767GO:0006355--regulation of transcription, dna-templated
GO terms cooccurrence

Topic #28: Interesting topic
Score: 0.0666GO:0010239--chloroplast mrna processing
Score: 0.0666GO:0009537--proplastid
Score: 0.0666GO:0016117--carotenoid biosynthetic process
Score: 0.0666GO:0009965--leaf morphogenesis
Score: 0.0666GO:0006355--regulation of transcription, dna-templated
GO terms cooccurrence

Topic #32: Interesting topic
Score: 0.0767GO:0004630--phospholipase d activity
Score: 0.0767GO:0046470--phosphatidylcholine metabolic process
Score: 0.0767GO:0009395--phospholipid catabolic process
Score: 0.0767GO:0016042--lipid catabolic process
Score: 0.0767GO:0006643--membrane lipid metabolic process
GO terms cooccurrence

Topic #35: Interesting topic
Score: 0.1411GO:0005777--peroxisome
Score: 0.1411GO:0030551--cyclic nucleotide binding
Score: 0.1411GO:0006637--acyl-coa metabolic process
Score: 0.1411GO:0047617--acyl-coa hydrolase activity
Score: 0.0014GO:0006952--defense response
GO terms cooccurrence

Topic #36: Interesting topic
Score: 0.0666GO:0005829--cytosol
Score: 0.0666GO:0009408--response to heat
Score: 0.0666GO:0006611--protein export from nucleus
Score: 0.0666GO:0031965--nuclear membrane
Score: 0.0666GO:0009555--pollen development
GO terms cooccurrence

Topic #40: Interesting topic
Score: 0.2463GO:0005739--mitochondrion
Score: 0.1238GO:0005783--endoplasmic reticulum
Score: 0.1238GO:0010584--pollen exine formation
Score: 0.1238GO:0005794--golgi apparatus
Score: 0.0012GO:0005886--plasma membrane
GO terms cooccurrence

Topic #42: Interesting topic
Score: 0.0501GO:0004672--protein kinase activity
Score: 0.0501GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity
Score: 0.0501GO:0009414--response to water deprivation
Score: 0.0501GO:0045737--positive regulation of cyclin-dependent protein serine/threonine kinase activity
Score: 0.0501GO:0072593--reactive oxygen species metabolic process
GO terms cooccurrence

Topic #43: Interesting topic
Score: 0.1411GO:0006629--lipid metabolic process
Score: 0.1411GO:0009507--chloroplast
Score: 0.1411GO:0016042--lipid catabolic process
Score: 0.1411GO:0004806--triglyceride lipase activity
Score: 0.0014GO:2000280--regulation of root development
GO terms cooccurrence

Topic #45: Interesting topic
Score: 0.0527GO:0070274--res complex
Score: 0.0527GO:0005686--u2 snrnp
Score: 0.0527GO:0006406--mrna export from nucleus
Score: 0.0527GO:0003723--rna binding
Score: 0.0527GO:0071011--precatalytic spliceosome
GO terms cooccurrence

Topic #56: Interesting topic
Score: 0.0436GO:0090305--nucleic acid phosphodiester bond hydrolysis
Score: 0.0436GO:0043137--dna replication, removal of rna primer
Score: 0.0436GO:0004527--exonuclease activity
Score: 0.0436GO:0004519--endonuclease activity
Score: 0.0436GO:0005654--nucleoplasm
GO terms cooccurrence

Topic #68: Interesting topic
Score: 0.1411GO:0009451--rna modification
Score: 0.1411GO:0004519--endonuclease activity
Score: 0.1411GO:0043231--intracellular membrane-bounded organelle
Score: 0.1411GO:0003723--rna binding
Score: 0.0014GO:2000280--regulation of root development
GO terms cooccurrence

Topic #71: Interesting topic
Score: 0.1640GO:0005685--u1 snrnp
Score: 0.1640GO:0006376--mrna splice site selection
Score: 0.1640GO:0003729--mrna binding
Score: 0.0016GO:2000280--regulation of root development
Score: 0.0016GO:0006629--lipid metabolic process
GO terms cooccurrence

Topic #98: Interesting topic
Score: 0.1411GO:0009505--plant-type cell wall
Score: 0.1411GO:0071555--cell wall organization
Score: 0.1411GO:0052793--pectin acetylesterase activity
Score: 0.1411GO:0052689--carboxylic ester hydrolase activity
Score: 0.0014GO:2000280--regulation of root development
GO terms cooccurrence

Topic #99: Interesting topic
Score: 0.0994GO:0046872--metal ion binding
Score: 0.0994GO:0016818--hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Score: 0.0994GO:0009164--nucleoside catabolic process
Score: 0.0994GO:0005739--mitochondrion
Score: 0.0994GO:0005528--fk506 binding
GO terms cooccurrence