81-SAR-SAS; refined (List of inflorescence SAR genes with identified alternative splicing events)




Topic #4: GO terms cooccurrence GO terms scores (left -- right)
GO:0006952--defense response GO:0009814--defense response, incompatible interaction 1 0.0994 -- 0.0994
GO:0006952--defense response GO:0009626--plant-type hypersensitive response 1 0.0994 -- 0.0994
GO:0006952--defense response GO:0005524--atp binding 3 0.0994 -- 0.0994
GO:0006952--defense response GO:0005886--plasma membrane 1 0.0994 -- 0.0994
GO:0009814--defense response, incompatible interaction GO:0009626--plant-type hypersensitive response 1 0.0994 -- 0.0994
GO:0009814--defense response, incompatible interaction GO:0005524--atp binding 1 0.0994 -- 0.0994
GO:0009814--defense response, incompatible interaction GO:0005886--plasma membrane 1 0.0994 -- 0.0994
GO:0009626--plant-type hypersensitive response GO:0005524--atp binding 1 0.0994 -- 0.0994
GO:0009626--plant-type hypersensitive response GO:0005886--plasma membrane 1 0.0994 -- 0.0994
GO:0005524--atp binding GO:0005886--plasma membrane 4 0.0994 -- 0.0994



Topic #5: GO terms cooccurrence GO terms scores (left -- right)
GO:0048316--seed development GO:0005773--vacuole 1 0.1103 -- 0.1103
GO:0048316--seed development GO:0004561--alpha-n-acetylglucosaminidase activity 1 0.1103 -- 0.1103
GO:0048316--seed development GO:0009507--chloroplast 2 0.1103 -- 0.1103
GO:0048316--seed development GO:0051781--positive regulation of cell division 1 0.1103 -- 0.1103
GO:0005773--vacuole GO:0004561--alpha-n-acetylglucosaminidase activity 1 0.1103 -- 0.1103
GO:0005773--vacuole GO:0009507--chloroplast 1 0.1103 -- 0.1103
GO:0005773--vacuole GO:0051781--positive regulation of cell division 1 0.1103 -- 0.1103
GO:0004561--alpha-n-acetylglucosaminidase activity GO:0009507--chloroplast 1 0.1103 -- 0.1103
GO:0004561--alpha-n-acetylglucosaminidase activity GO:0051781--positive regulation of cell division 1 0.1103 -- 0.1103
GO:0009507--chloroplast GO:0051781--positive regulation of cell division 1 0.1103 -- 0.1103



Topic #6: GO terms cooccurrence GO terms scores (left -- right)
GO:0030663--copi-coated vesicle membrane GO:0006468--protein phosphorylation 1 0.0767 -- 0.0767
GO:0030663--copi-coated vesicle membrane GO:0004672--protein kinase activity 1 0.0767 -- 0.0767
GO:0030663--copi-coated vesicle membrane GO:0004674--protein serine/threonine kinase activity 1 0.0767 -- 0.0767
GO:0030663--copi-coated vesicle membrane GO:0005524--atp binding 1 0.0767 -- 0.0767
GO:0006468--protein phosphorylation GO:0004672--protein kinase activity 2 0.0767 -- 0.0767
GO:0006468--protein phosphorylation GO:0004674--protein serine/threonine kinase activity 3 0.0767 -- 0.0767
GO:0006468--protein phosphorylation GO:0005524--atp binding 4 0.0767 -- 0.0767
GO:0004672--protein kinase activity GO:0004674--protein serine/threonine kinase activity 2 0.0767 -- 0.0767
GO:0004672--protein kinase activity GO:0005524--atp binding 2 0.0767 -- 0.0767
GO:0004674--protein serine/threonine kinase activity GO:0005524--atp binding 3 0.0767 -- 0.0767



Topic #7: GO terms cooccurrence GO terms scores (left -- right)
GO:0008270--zinc ion binding GO:0005618--cell wall 1 0.1801 -- 0.0905
GO:0008270--zinc ion binding GO:0005774--vacuolar membrane 1 0.1801 -- 0.0905
GO:0008270--zinc ion binding GO:0005773--vacuole 1 0.1801 -- 0.0905
GO:0008270--zinc ion binding GO:0006013--mannose metabolic process 1 0.1801 -- 0.0905
GO:0005618--cell wall GO:0005774--vacuolar membrane 1 0.0905 -- 0.0905
GO:0005618--cell wall GO:0005773--vacuole 1 0.0905 -- 0.0905
GO:0005618--cell wall GO:0006013--mannose metabolic process 1 0.0905 -- 0.0905
GO:0005774--vacuolar membrane GO:0005773--vacuole 1 0.0905 -- 0.0905
GO:0005774--vacuolar membrane GO:0006013--mannose metabolic process 1 0.0905 -- 0.0905
GO:0005773--vacuole GO:0006013--mannose metabolic process 1 0.0905 -- 0.0905



Topic #8: GO terms cooccurrence GO terms scores (left -- right)
GO:0006397--mrna processing GO:0044030--regulation of dna methylation 1 0.1103 -- 0.1103
GO:0006397--mrna processing GO:0005654--nucleoplasm 1 0.1103 -- 0.1103
GO:0006397--mrna processing GO:0000398--mrna splicing, via spliceosome 1 0.1103 -- 0.1103
GO:0006397--mrna processing GO:0009793--embryo development ending in seed dormancy 1 0.1103 -- 0.1103
GO:0044030--regulation of dna methylation GO:0005654--nucleoplasm 1 0.1103 -- 0.1103
GO:0044030--regulation of dna methylation GO:0000398--mrna splicing, via spliceosome 1 0.1103 -- 0.1103
GO:0044030--regulation of dna methylation GO:0009793--embryo development ending in seed dormancy 1 0.1103 -- 0.1103
GO:0005654--nucleoplasm GO:0000398--mrna splicing, via spliceosome 2 0.1103 -- 0.1103
GO:0005654--nucleoplasm GO:0009793--embryo development ending in seed dormancy 1 0.1103 -- 0.1103
GO:0000398--mrna splicing, via spliceosome GO:0009793--embryo development ending in seed dormancy 1 0.1103 -- 0.1103



Topic #10: GO terms cooccurrence GO terms scores (left -- right)
GO:0005774--vacuolar membrane GO:0000325--plant-type vacuole 1 0.0994 -- 0.0994
GO:0005774--vacuolar membrane GO:0005524--atp binding 1 0.0994 -- 0.0994
GO:0005774--vacuolar membrane GO:0055085--transmembrane transport 1 0.0994 -- 0.0994
GO:0005774--vacuolar membrane GO:0042626--atpase activity, coupled to transmembrane movement of substances 1 0.0994 -- 0.0994
GO:0000325--plant-type vacuole GO:0005524--atp binding 1 0.0994 -- 0.0994
GO:0000325--plant-type vacuole GO:0055085--transmembrane transport 1 0.0994 -- 0.0994
GO:0000325--plant-type vacuole GO:0042626--atpase activity, coupled to transmembrane movement of substances 1 0.0994 -- 0.0994
GO:0005524--atp binding GO:0055085--transmembrane transport 1 0.0994 -- 0.0994
GO:0005524--atp binding GO:0042626--atpase activity, coupled to transmembrane movement of substances 1 0.0994 -- 0.0994
GO:0055085--transmembrane transport GO:0042626--atpase activity, coupled to transmembrane movement of substances 1 0.0994 -- 0.0994



Topic #11: GO terms cooccurrence GO terms scores (left -- right)
GO:0006468--protein phosphorylation GO:0005524--atp binding 4 0.1238 -- 0.1238
GO:0006468--protein phosphorylation GO:0005886--plasma membrane 2 0.1238 -- 0.1238
GO:0006468--protein phosphorylation GO:0004674--protein serine/threonine kinase activity 3 0.1238 -- 0.1238
GO:0006468--protein phosphorylation GO:0007169--transmembrane receptor protein tyrosine kinase signaling pathway 1 0.1238 -- 0.1238
GO:0005524--atp binding GO:0005886--plasma membrane 4 0.1238 -- 0.1238
GO:0005524--atp binding GO:0004674--protein serine/threonine kinase activity 3 0.1238 -- 0.1238
GO:0005524--atp binding GO:0007169--transmembrane receptor protein tyrosine kinase signaling pathway 1 0.1238 -- 0.1238
GO:0005886--plasma membrane GO:0004674--protein serine/threonine kinase activity 1 0.1238 -- 0.1238
GO:0005886--plasma membrane GO:0007169--transmembrane receptor protein tyrosine kinase signaling pathway 1 0.1238 -- 0.1238
GO:0004674--protein serine/threonine kinase activity GO:0007169--transmembrane receptor protein tyrosine kinase signaling pathway 1 0.1238 -- 0.1238



Topic #12: GO terms cooccurrence GO terms scores (left -- right)
GO:0009790--embryo development GO:0009536--plastid 1 0.0713 -- 0.0713
GO:0009790--embryo development GO:0009941--chloroplast envelope 1 0.0713 -- 0.0713
GO:0009790--embryo development GO:0008565--protein transporter activity 1 0.0713 -- 0.0713
GO:0009790--embryo development GO:0009507--chloroplast 1 0.0713 -- 0.0713
GO:0009536--plastid GO:0009941--chloroplast envelope 1 0.0713 -- 0.0713
GO:0009536--plastid GO:0008565--protein transporter activity 1 0.0713 -- 0.0713
GO:0009536--plastid GO:0009507--chloroplast 1 0.0713 -- 0.0713
GO:0009941--chloroplast envelope GO:0008565--protein transporter activity 1 0.0713 -- 0.0713
GO:0009941--chloroplast envelope GO:0009507--chloroplast 1 0.0713 -- 0.0713
GO:0008565--protein transporter activity GO:0009507--chloroplast 1 0.0713 -- 0.0713



Topic #19: GO terms cooccurrence GO terms scores (left -- right)
GO:0009853--photorespiration GO:0005759--mitochondrial matrix 1 0.1238 -- 0.1238
GO:0009853--photorespiration GO:0006730--one-carbon metabolic process 1 0.1238 -- 0.1238
GO:0009853--photorespiration GO:0004326--tetrahydrofolylpolyglutamate synthase activity 1 0.1238 -- 0.1238
GO:0009853--photorespiration GO:0090351--seedling development 1 0.1238 -- 0.1238
GO:0005759--mitochondrial matrix GO:0006730--one-carbon metabolic process 1 0.1238 -- 0.1238
GO:0005759--mitochondrial matrix GO:0004326--tetrahydrofolylpolyglutamate synthase activity 1 0.1238 -- 0.1238
GO:0005759--mitochondrial matrix GO:0090351--seedling development 1 0.1238 -- 0.1238
GO:0006730--one-carbon metabolic process GO:0004326--tetrahydrofolylpolyglutamate synthase activity 1 0.1238 -- 0.1238
GO:0006730--one-carbon metabolic process GO:0090351--seedling development 1 0.1238 -- 0.1238
GO:0004326--tetrahydrofolylpolyglutamate synthase activity GO:0090351--seedling development 1 0.1238 -- 0.1238



Topic #29: GO terms cooccurrence GO terms scores (left -- right)
GO:0006952--defense response GO:0005524--atp binding 3 0.2287 -- 0.1527
GO:0006952--defense response GO:0043531--adp binding 3 0.2287 -- 0.1527
GO:0006952--defense response GO:2000071--regulation of defense response by callose deposition 1 0.2287 -- 0.0767
GO:0006952--defense response GO:0007165--signal transduction 2 0.2287 -- 0.0767
GO:0005524--atp binding GO:0043531--adp binding 3 0.1527 -- 0.1527
GO:0005524--atp binding GO:2000071--regulation of defense response by callose deposition 1 0.1527 -- 0.0767
GO:0005524--atp binding GO:0007165--signal transduction 2 0.1527 -- 0.0767
GO:0043531--adp binding GO:2000071--regulation of defense response by callose deposition 1 0.1527 -- 0.0767
GO:0043531--adp binding GO:0007165--signal transduction 2 0.1527 -- 0.0767
GO:2000071--regulation of defense response by callose deposition GO:0007165--signal transduction 1 0.0767 -- 0.0767



Topic #38: GO terms cooccurrence GO terms scores (left -- right)
GO:0003677--dna binding GO:0003700--transcription factor activity, sequence-specific dna binding 2 0.0831 -- 0.0831
GO:0003677--dna binding GO:0008270--zinc ion binding 1 0.0831 -- 0.0831
GO:0003677--dna binding GO:0009733--response to auxin 1 0.0831 -- 0.0831
GO:0003677--dna binding GO:0045893--positive regulation of transcription, dna-templated 1 0.0831 -- 0.0831
GO:0003700--transcription factor activity, sequence-specific dna binding GO:0008270--zinc ion binding 1 0.0831 -- 0.0831
GO:0003700--transcription factor activity, sequence-specific dna binding GO:0009733--response to auxin 1 0.0831 -- 0.0831
GO:0003700--transcription factor activity, sequence-specific dna binding GO:0045893--positive regulation of transcription, dna-templated 1 0.0831 -- 0.0831
GO:0008270--zinc ion binding GO:0009733--response to auxin 1 0.0831 -- 0.0831
GO:0008270--zinc ion binding GO:0045893--positive regulation of transcription, dna-templated 1 0.0831 -- 0.0831
GO:0009733--response to auxin GO:0045893--positive regulation of transcription, dna-templated 2 0.0831 -- 0.0831



Topic #47: GO terms cooccurrence GO terms scores (left -- right)
GO:0005794--golgi apparatus GO:0000139--golgi membrane 1 0.1238 -- 0.1238
GO:0005794--golgi apparatus GO:0016757--transferase activity, transferring glycosyl groups 1 0.1238 -- 0.1238
GO:0005794--golgi apparatus GO:0016759--cellulose synthase activity 1 0.1238 -- 0.1238
GO:0005794--golgi apparatus GO:0071555--cell wall organization 1 0.1238 -- 0.1238
GO:0000139--golgi membrane GO:0016757--transferase activity, transferring glycosyl groups 1 0.1238 -- 0.1238
GO:0000139--golgi membrane GO:0016759--cellulose synthase activity 1 0.1238 -- 0.1238
GO:0000139--golgi membrane GO:0071555--cell wall organization 1 0.1238 -- 0.1238
GO:0016757--transferase activity, transferring glycosyl groups GO:0016759--cellulose synthase activity 1 0.1238 -- 0.1238
GO:0016757--transferase activity, transferring glycosyl groups GO:0071555--cell wall organization 1 0.1238 -- 0.1238
GO:0016759--cellulose synthase activity GO:0071555--cell wall organization 1 0.1238 -- 0.1238



Topic #62: GO terms cooccurrence GO terms scores (left -- right)
GO:0009570--chloroplast stroma GO:0004721--phosphoprotein phosphatase activity 1 0.0994 -- 0.0994
GO:0009570--chloroplast stroma GO:0071482--cellular response to light stimulus 1 0.0994 -- 0.0994
GO:0009570--chloroplast stroma GO:0010027--thylakoid membrane organization 1 0.0994 -- 0.0994
GO:0009570--chloroplast stroma GO:0046872--metal ion binding 1 0.0994 -- 0.0994
GO:0004721--phosphoprotein phosphatase activity GO:0071482--cellular response to light stimulus 1 0.0994 -- 0.0994
GO:0004721--phosphoprotein phosphatase activity GO:0010027--thylakoid membrane organization 1 0.0994 -- 0.0994
GO:0004721--phosphoprotein phosphatase activity GO:0046872--metal ion binding 1 0.0994 -- 0.0994
GO:0071482--cellular response to light stimulus GO:0010027--thylakoid membrane organization 1 0.0994 -- 0.0994
GO:0071482--cellular response to light stimulus GO:0046872--metal ion binding 1 0.0994 -- 0.0994
GO:0010027--thylakoid membrane organization GO:0046872--metal ion binding 1 0.0994 -- 0.0994



Topic #65: GO terms cooccurrence GO terms scores (left -- right)
GO:0000082--g1/s transition of mitotic cell cycle GO:0003677--dna binding 1 0.0436 -- 0.0436
GO:0000082--g1/s transition of mitotic cell cycle GO:0046982--protein heterodimerization activity 1 0.0436 -- 0.0436
GO:0000082--g1/s transition of mitotic cell cycle GO:0005667--transcription factor complex 1 0.0436 -- 0.0436
GO:0000082--g1/s transition of mitotic cell cycle GO:0006351--transcription, dna-templated 1 0.0436 -- 0.0436
GO:0003677--dna binding GO:0046982--protein heterodimerization activity 1 0.0436 -- 0.0436
GO:0003677--dna binding GO:0005667--transcription factor complex 1 0.0436 -- 0.0436
GO:0003677--dna binding GO:0006351--transcription, dna-templated 4 0.0436 -- 0.0436
GO:0046982--protein heterodimerization activity GO:0005667--transcription factor complex 1 0.0436 -- 0.0436
GO:0046982--protein heterodimerization activity GO:0006351--transcription, dna-templated 1 0.0436 -- 0.0436
GO:0005667--transcription factor complex GO:0006351--transcription, dna-templated 1 0.0436 -- 0.0436



Topic #73: GO terms cooccurrence GO terms scores (left -- right)
GO:0008080--n-acetyltransferase activity GO:0005730--nucleolus 1 0.1103 -- 0.1103
GO:0008080--n-acetyltransferase activity GO:0005524--atp binding 1 0.1103 -- 0.1103
GO:0008080--n-acetyltransferase activity GO:0042274--ribosomal small subunit biogenesis 1 0.1103 -- 0.1103
GO:0008080--n-acetyltransferase activity GO:0051391--trna acetylation 1 0.1103 -- 0.1103
GO:0005730--nucleolus GO:0005524--atp binding 1 0.1103 -- 0.1103
GO:0005730--nucleolus GO:0042274--ribosomal small subunit biogenesis 1 0.1103 -- 0.1103
GO:0005730--nucleolus GO:0051391--trna acetylation 1 0.1103 -- 0.1103
GO:0005524--atp binding GO:0042274--ribosomal small subunit biogenesis 1 0.1103 -- 0.1103
GO:0005524--atp binding GO:0051391--trna acetylation 1 0.1103 -- 0.1103
GO:0042274--ribosomal small subunit biogenesis GO:0051391--trna acetylation 1 0.1103 -- 0.1103



Topic #81: GO terms cooccurrence GO terms scores (left -- right)
GO:0005794--golgi apparatus GO:0060321--acceptance of pollen 1 0.1326 -- 0.0666
GO:0005794--golgi apparatus GO:0000145--exocyst 1 0.1326 -- 0.0666
GO:0005794--golgi apparatus GO:0005829--cytosol 1 0.1326 -- 0.0666
GO:0005794--golgi apparatus GO:0009860--pollen tube growth 1 0.1326 -- 0.0666
GO:0060321--acceptance of pollen GO:0000145--exocyst 1 0.0666 -- 0.0666
GO:0060321--acceptance of pollen GO:0005829--cytosol 1 0.0666 -- 0.0666
GO:0060321--acceptance of pollen GO:0009860--pollen tube growth 1 0.0666 -- 0.0666
GO:0000145--exocyst GO:0005829--cytosol 1 0.0666 -- 0.0666
GO:0000145--exocyst GO:0009860--pollen tube growth 1 0.0666 -- 0.0666
GO:0005829--cytosol GO:0009860--pollen tube growth 2 0.0666 -- 0.0666



Topic #82: GO terms cooccurrence GO terms scores (left -- right)
GO:0006351--transcription, dna-templated GO:0030154--cell differentiation 4 0.0832 -- 0.0418
GO:0006351--transcription, dna-templated GO:0009911--positive regulation of flower development 1 0.0832 -- 0.0418
GO:0006351--transcription, dna-templated GO:0009908--flower development 4 0.0832 -- 0.0418
GO:0006351--transcription, dna-templated GO:0003723--rna binding 1 0.0832 -- 0.0418
GO:0030154--cell differentiation GO:0009911--positive regulation of flower development 1 0.0418 -- 0.0418
GO:0030154--cell differentiation GO:0009908--flower development 3 0.0418 -- 0.0418
GO:0030154--cell differentiation GO:0003723--rna binding 1 0.0418 -- 0.0418
GO:0009911--positive regulation of flower development GO:0009908--flower development 1 0.0418 -- 0.0418
GO:0009911--positive regulation of flower development GO:0003723--rna binding 1 0.0418 -- 0.0418
GO:0009908--flower development GO:0003723--rna binding 1 0.0418 -- 0.0418



Topic #87: GO terms cooccurrence GO terms scores (left -- right)
GO:0016301--kinase activity GO:0009738--abscisic acid-activated signaling pathway 1 0.0666 -- 0.0666
GO:0016301--kinase activity GO:0005524--atp binding 3 0.0666 -- 0.0666
GO:0016301--kinase activity GO:0005516--calmodulin binding 1 0.0666 -- 0.0666
GO:0016301--kinase activity GO:0009931--calcium-dependent protein serine/threonine kinase activity 1 0.0666 -- 0.0666
GO:0009738--abscisic acid-activated signaling pathway GO:0005524--atp binding 1 0.0666 -- 0.0666
GO:0009738--abscisic acid-activated signaling pathway GO:0005516--calmodulin binding 1 0.0666 -- 0.0666
GO:0009738--abscisic acid-activated signaling pathway GO:0009931--calcium-dependent protein serine/threonine kinase activity 1 0.0666 -- 0.0666
GO:0005524--atp binding GO:0005516--calmodulin binding 1 0.0666 -- 0.0666
GO:0005524--atp binding GO:0009931--calcium-dependent protein serine/threonine kinase activity 1 0.0666 -- 0.0666
GO:0005516--calmodulin binding GO:0009931--calcium-dependent protein serine/threonine kinase activity 1 0.0666 -- 0.0666



Topic #88: GO terms cooccurrence GO terms scores (left -- right)
GO:0043622--cortical microtubule organization GO:0016301--kinase activity 1 0.0666 -- 0.0666
GO:0043622--cortical microtubule organization GO:0004674--protein serine/threonine kinase activity 1 0.0666 -- 0.0666
GO:0043622--cortical microtubule organization GO:0055028--cortical microtubule 1 0.0666 -- 0.0666
GO:0043622--cortical microtubule organization GO:0009913--epidermal cell differentiation 1 0.0666 -- 0.0666
GO:0016301--kinase activity GO:0004674--protein serine/threonine kinase activity 1 0.0666 -- 0.0666
GO:0016301--kinase activity GO:0055028--cortical microtubule 1 0.0666 -- 0.0666
GO:0016301--kinase activity GO:0009913--epidermal cell differentiation 1 0.0666 -- 0.0666
GO:0004674--protein serine/threonine kinase activity GO:0055028--cortical microtubule 1 0.0666 -- 0.0666
GO:0004674--protein serine/threonine kinase activity GO:0009913--epidermal cell differentiation 1 0.0666 -- 0.0666
GO:0055028--cortical microtubule GO:0009913--epidermal cell differentiation 1 0.0666 -- 0.0666



Topic #91: GO terms cooccurrence GO terms scores (left -- right)
GO:0004652--polynucleotide adenylyltransferase activity GO:0006378--mrna polyadenylation 1 0.0905 -- 0.0905
GO:0004652--polynucleotide adenylyltransferase activity GO:0043631--rna polyadenylation 1 0.0905 -- 0.0905
GO:0004652--polynucleotide adenylyltransferase activity GO:0016779--nucleotidyltransferase activity 1 0.0905 -- 0.0905
GO:0004652--polynucleotide adenylyltransferase activity GO:0031123--rna 3'-end processing 1 0.0905 -- 0.0905
GO:0006378--mrna polyadenylation GO:0043631--rna polyadenylation 1 0.0905 -- 0.0905
GO:0006378--mrna polyadenylation GO:0016779--nucleotidyltransferase activity 1 0.0905 -- 0.0905
GO:0006378--mrna polyadenylation GO:0031123--rna 3'-end processing 1 0.0905 -- 0.0905
GO:0043631--rna polyadenylation GO:0016779--nucleotidyltransferase activity 1 0.0905 -- 0.0905
GO:0043631--rna polyadenylation GO:0031123--rna 3'-end processing 1 0.0905 -- 0.0905
GO:0016779--nucleotidyltransferase activity GO:0031123--rna 3'-end processing 1 0.0905 -- 0.0905



Topic #94: GO terms cooccurrence GO terms scores (left -- right)
GO:0030154--cell differentiation GO:0006351--transcription, dna-templated 4 0.0666 -- 0.0666
GO:0030154--cell differentiation GO:0046983--protein dimerization activity 1 0.0666 -- 0.0666
GO:0030154--cell differentiation GO:0010048--vernalization response 1 0.0666 -- 0.0666
GO:0030154--cell differentiation GO:0045944--positive regulation of transcription from rna polymerase ii promoter 1 0.0666 -- 0.0666
GO:0006351--transcription, dna-templated GO:0046983--protein dimerization activity 1 0.0666 -- 0.0666
GO:0006351--transcription, dna-templated GO:0010048--vernalization response 1 0.0666 -- 0.0666
GO:0006351--transcription, dna-templated GO:0045944--positive regulation of transcription from rna polymerase ii promoter 1 0.0666 -- 0.0666
GO:0046983--protein dimerization activity GO:0010048--vernalization response 1 0.0666 -- 0.0666
GO:0046983--protein dimerization activity GO:0045944--positive regulation of transcription from rna polymerase ii promoter 1 0.0666 -- 0.0666
GO:0010048--vernalization response GO:0045944--positive regulation of transcription from rna polymerase ii promoter 1 0.0666 -- 0.0666



Topic #96: GO terms cooccurrence GO terms scores (left -- right)
GO:0009855--determination of bilateral symmetry GO:0010014--meristem initiation 1 0.0589 -- 0.0589
GO:0009855--determination of bilateral symmetry GO:0003700--transcription factor activity, sequence-specific dna binding 1 0.0589 -- 0.0589
GO:0009855--determination of bilateral symmetry GO:0080060--integument development 1 0.0589 -- 0.0589
GO:0009855--determination of bilateral symmetry GO:0003677--dna binding 1 0.0589 -- 0.0589
GO:0010014--meristem initiation GO:0003700--transcription factor activity, sequence-specific dna binding 1 0.0589 -- 0.0589
GO:0010014--meristem initiation GO:0080060--integument development 1 0.0589 -- 0.0589
GO:0010014--meristem initiation GO:0003677--dna binding 1 0.0589 -- 0.0589
GO:0003700--transcription factor activity, sequence-specific dna binding GO:0080060--integument development 1 0.0589 -- 0.0589
GO:0003700--transcription factor activity, sequence-specific dna binding GO:0003677--dna binding 2 0.0589 -- 0.0589
GO:0080060--integument development GO:0003677--dna binding 1 0.0589 -- 0.0589



Topic #1: GO terms cooccurrence GO terms scores (left -- right)
GO:0009507--chloroplast GO:0009555--pollen development 0 0.0625 -- 0.0314
GO:0009507--chloroplast GO:0000785--chromatin 0 0.0625 -- 0.0314
GO:0009507--chloroplast GO:0048366--leaf development 0 0.0625 -- 0.0314
GO:0009507--chloroplast GO:0010468--regulation of gene expression 0 0.0625 -- 0.0314
GO:0009555--pollen development GO:0000785--chromatin 1 0.0314 -- 0.0314
GO:0009555--pollen development GO:0048366--leaf development 1 0.0314 -- 0.0314
GO:0009555--pollen development GO:0010468--regulation of gene expression 1 0.0314 -- 0.0314
GO:0000785--chromatin GO:0048366--leaf development 1 0.0314 -- 0.0314
GO:0000785--chromatin GO:0010468--regulation of gene expression 1 0.0314 -- 0.0314
GO:0048366--leaf development GO:0010468--regulation of gene expression 1 0.0314 -- 0.0314



Topic #9: GO terms cooccurrence GO terms scores (left -- right)
GO:0005886--plasma membrane GO:0003682--chromatin binding 1 0.1640 -- 0.1640
GO:0005886--plasma membrane GO:0008536--ran gtpase binding 1 0.1640 -- 0.1640
GO:0005886--plasma membrane GO:2000280--regulation of root development 0 0.1640 -- 0.0016
GO:0005886--plasma membrane GO:0006974--cellular response to dna damage stimulus 0 0.1640 -- 0.0016
GO:0003682--chromatin binding GO:0008536--ran gtpase binding 1 0.1640 -- 0.1640
GO:0003682--chromatin binding GO:2000280--regulation of root development 0 0.1640 -- 0.0016
GO:0003682--chromatin binding GO:0006974--cellular response to dna damage stimulus 0 0.1640 -- 0.0016
GO:0008536--ran gtpase binding GO:2000280--regulation of root development 0 0.1640 -- 0.0016
GO:0008536--ran gtpase binding GO:0006974--cellular response to dna damage stimulus 0 0.1640 -- 0.0016
GO:2000280--regulation of root development GO:0006974--cellular response to dna damage stimulus 0 0.0016 -- 0.0016



Topic #16: GO terms cooccurrence GO terms scores (left -- right)
GO:0005829--cytosol GO:0003723--rna binding 1 0.4378 -- 0.1103
GO:0005829--cytosol GO:0003729--mrna binding 1 0.4378 -- 0.1103
GO:0005829--cytosol GO:2000280--regulation of root development 0 0.4378 -- 0.0011
GO:0005829--cytosol GO:0006974--cellular response to dna damage stimulus 0 0.4378 -- 0.0011
GO:0003723--rna binding GO:0003729--mrna binding 2 0.1103 -- 0.1103
GO:0003723--rna binding GO:2000280--regulation of root development 0 0.1103 -- 0.0011
GO:0003723--rna binding GO:0006974--cellular response to dna damage stimulus 0 0.1103 -- 0.0011
GO:0003729--mrna binding GO:2000280--regulation of root development 0 0.1103 -- 0.0011
GO:0003729--mrna binding GO:0006974--cellular response to dna damage stimulus 0 0.1103 -- 0.0011
GO:2000280--regulation of root development GO:0006974--cellular response to dna damage stimulus 0 0.0011 -- 0.0011



Topic #18: GO terms cooccurrence GO terms scores (left -- right)
GO:0003723--rna binding GO:0005654--nucleoplasm 2 0.4378 -- 0.1103
GO:0003723--rna binding GO:0016973--poly(a)+ mrna export from nucleus 1 0.4378 -- 0.1103
GO:0003723--rna binding GO:2000280--regulation of root development 0 0.4378 -- 0.0011
GO:0003723--rna binding GO:0006810--transport 0 0.4378 -- 0.0011
GO:0005654--nucleoplasm GO:0016973--poly(a)+ mrna export from nucleus 1 0.1103 -- 0.1103
GO:0005654--nucleoplasm GO:2000280--regulation of root development 0 0.1103 -- 0.0011
GO:0005654--nucleoplasm GO:0006810--transport 0 0.1103 -- 0.0011
GO:0016973--poly(a)+ mrna export from nucleus GO:2000280--regulation of root development 0 0.1103 -- 0.0011
GO:0016973--poly(a)+ mrna export from nucleus GO:0006810--transport 0 0.1103 -- 0.0011
GO:2000280--regulation of root development GO:0006810--transport 0 0.0011 -- 0.0011



Topic #22: GO terms cooccurrence GO terms scores (left -- right)
GO:0016301--kinase activity GO:0005886--plasma membrane 3 0.1527 -- 0.1527
GO:0016301--kinase activity GO:0009909--regulation of flower development 0 0.1527 -- 0.0767
GO:0016301--kinase activity GO:0016592--mediator complex 0 0.1527 -- 0.0767
GO:0016301--kinase activity GO:0006355--regulation of transcription, dna-templated 0 0.1527 -- 0.0767
GO:0005886--plasma membrane GO:0009909--regulation of flower development 0 0.1527 -- 0.0767
GO:0005886--plasma membrane GO:0016592--mediator complex 0 0.1527 -- 0.0767
GO:0005886--plasma membrane GO:0006355--regulation of transcription, dna-templated 0 0.1527 -- 0.0767
GO:0009909--regulation of flower development GO:0016592--mediator complex 1 0.0767 -- 0.0767
GO:0009909--regulation of flower development GO:0006355--regulation of transcription, dna-templated 2 0.0767 -- 0.0767
GO:0016592--mediator complex GO:0006355--regulation of transcription, dna-templated 1 0.0767 -- 0.0767



Topic #28: GO terms cooccurrence GO terms scores (left -- right)
GO:0010239--chloroplast mrna processing GO:0009537--proplastid 1 0.0666 -- 0.0666
GO:0010239--chloroplast mrna processing GO:0016117--carotenoid biosynthetic process 1 0.0666 -- 0.0666
GO:0010239--chloroplast mrna processing GO:0009965--leaf morphogenesis 1 0.0666 -- 0.0666
GO:0010239--chloroplast mrna processing GO:0006355--regulation of transcription, dna-templated 1 0.0666 -- 0.0666
GO:0009537--proplastid GO:0016117--carotenoid biosynthetic process 1 0.0666 -- 0.0666
GO:0009537--proplastid GO:0009965--leaf morphogenesis 1 0.0666 -- 0.0666
GO:0009537--proplastid GO:0006355--regulation of transcription, dna-templated 1 0.0666 -- 0.0666
GO:0016117--carotenoid biosynthetic process GO:0009965--leaf morphogenesis 1 0.0666 -- 0.0666
GO:0016117--carotenoid biosynthetic process GO:0006355--regulation of transcription, dna-templated 1 0.0666 -- 0.0666
GO:0009965--leaf morphogenesis GO:0006355--regulation of transcription, dna-templated 2 0.0666 -- 0.0666



Topic #32: GO terms cooccurrence GO terms scores (left -- right)
GO:0004630--phospholipase d activity GO:0046470--phosphatidylcholine metabolic process 1 0.0767 -- 0.0767
GO:0004630--phospholipase d activity GO:0009395--phospholipid catabolic process 1 0.0767 -- 0.0767
GO:0004630--phospholipase d activity GO:0016042--lipid catabolic process 1 0.0767 -- 0.0767
GO:0004630--phospholipase d activity GO:0006643--membrane lipid metabolic process 1 0.0767 -- 0.0767
GO:0046470--phosphatidylcholine metabolic process GO:0009395--phospholipid catabolic process 1 0.0767 -- 0.0767
GO:0046470--phosphatidylcholine metabolic process GO:0016042--lipid catabolic process 1 0.0767 -- 0.0767
GO:0046470--phosphatidylcholine metabolic process GO:0006643--membrane lipid metabolic process 1 0.0767 -- 0.0767
GO:0009395--phospholipid catabolic process GO:0016042--lipid catabolic process 1 0.0767 -- 0.0767
GO:0009395--phospholipid catabolic process GO:0006643--membrane lipid metabolic process 1 0.0767 -- 0.0767
GO:0016042--lipid catabolic process GO:0006643--membrane lipid metabolic process 1 0.0767 -- 0.0767



Topic #35: GO terms cooccurrence GO terms scores (left -- right)
GO:0005777--peroxisome GO:0030551--cyclic nucleotide binding 1 0.1411 -- 0.1411
GO:0005777--peroxisome GO:0006637--acyl-coa metabolic process 1 0.1411 -- 0.1411
GO:0005777--peroxisome GO:0047617--acyl-coa hydrolase activity 1 0.1411 -- 0.1411
GO:0005777--peroxisome GO:0006952--defense response 0 0.1411 -- 0.0014
GO:0030551--cyclic nucleotide binding GO:0006637--acyl-coa metabolic process 1 0.1411 -- 0.1411
GO:0030551--cyclic nucleotide binding GO:0047617--acyl-coa hydrolase activity 1 0.1411 -- 0.1411
GO:0030551--cyclic nucleotide binding GO:0006952--defense response 0 0.1411 -- 0.0014
GO:0006637--acyl-coa metabolic process GO:0047617--acyl-coa hydrolase activity 1 0.1411 -- 0.1411
GO:0006637--acyl-coa metabolic process GO:0006952--defense response 0 0.1411 -- 0.0014
GO:0047617--acyl-coa hydrolase activity GO:0006952--defense response 0 0.1411 -- 0.0014



Topic #36: GO terms cooccurrence GO terms scores (left -- right)
GO:0005829--cytosol GO:0009408--response to heat 1 0.0666 -- 0.0666
GO:0005829--cytosol GO:0006611--protein export from nucleus 1 0.0666 -- 0.0666
GO:0005829--cytosol GO:0031965--nuclear membrane 1 0.0666 -- 0.0666
GO:0005829--cytosol GO:0009555--pollen development 1 0.0666 -- 0.0666
GO:0009408--response to heat GO:0006611--protein export from nucleus 1 0.0666 -- 0.0666
GO:0009408--response to heat GO:0031965--nuclear membrane 1 0.0666 -- 0.0666
GO:0009408--response to heat GO:0009555--pollen development 1 0.0666 -- 0.0666
GO:0006611--protein export from nucleus GO:0031965--nuclear membrane 1 0.0666 -- 0.0666
GO:0006611--protein export from nucleus GO:0009555--pollen development 1 0.0666 -- 0.0666
GO:0031965--nuclear membrane GO:0009555--pollen development 1 0.0666 -- 0.0666



Topic #40: GO terms cooccurrence GO terms scores (left -- right)
GO:0005739--mitochondrion GO:0005783--endoplasmic reticulum 1 0.2463 -- 0.1238
GO:0005739--mitochondrion GO:0010584--pollen exine formation 1 0.2463 -- 0.1238
GO:0005739--mitochondrion GO:0005794--golgi apparatus 1 0.2463 -- 0.1238
GO:0005739--mitochondrion GO:0005886--plasma membrane 1 0.2463 -- 0.0012
GO:0005783--endoplasmic reticulum GO:0010584--pollen exine formation 1 0.1238 -- 0.1238
GO:0005783--endoplasmic reticulum GO:0005794--golgi apparatus 1 0.1238 -- 0.1238
GO:0005783--endoplasmic reticulum GO:0005886--plasma membrane 0 0.1238 -- 0.0012
GO:0010584--pollen exine formation GO:0005794--golgi apparatus 1 0.1238 -- 0.1238
GO:0010584--pollen exine formation GO:0005886--plasma membrane 0 0.1238 -- 0.0012
GO:0005794--golgi apparatus GO:0005886--plasma membrane 0 0.1238 -- 0.0012



Topic #42: GO terms cooccurrence GO terms scores (left -- right)
GO:0004672--protein kinase activity GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity 1 0.0501 -- 0.0501
GO:0004672--protein kinase activity GO:0009414--response to water deprivation 1 0.0501 -- 0.0501
GO:0004672--protein kinase activity GO:0045737--positive regulation of cyclin-dependent protein serine/threonine kinase activity 1 0.0501 -- 0.0501
GO:0004672--protein kinase activity GO:0072593--reactive oxygen species metabolic process 1 0.0501 -- 0.0501
GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity GO:0009414--response to water deprivation 1 0.0501 -- 0.0501
GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity GO:0045737--positive regulation of cyclin-dependent protein serine/threonine kinase activity 1 0.0501 -- 0.0501
GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity GO:0072593--reactive oxygen species metabolic process 1 0.0501 -- 0.0501
GO:0009414--response to water deprivation GO:0045737--positive regulation of cyclin-dependent protein serine/threonine kinase activity 1 0.0501 -- 0.0501
GO:0009414--response to water deprivation GO:0072593--reactive oxygen species metabolic process 1 0.0501 -- 0.0501
GO:0045737--positive regulation of cyclin-dependent protein serine/threonine kinase activity GO:0072593--reactive oxygen species metabolic process 1 0.0501 -- 0.0501



Topic #43: GO terms cooccurrence GO terms scores (left -- right)
GO:0006629--lipid metabolic process GO:0009507--chloroplast 1 0.1411 -- 0.1411
GO:0006629--lipid metabolic process GO:0016042--lipid catabolic process 1 0.1411 -- 0.1411
GO:0006629--lipid metabolic process GO:0004806--triglyceride lipase activity 1 0.1411 -- 0.1411
GO:0006629--lipid metabolic process GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0009507--chloroplast GO:0016042--lipid catabolic process 2 0.1411 -- 0.1411
GO:0009507--chloroplast GO:0004806--triglyceride lipase activity 1 0.1411 -- 0.1411
GO:0009507--chloroplast GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0016042--lipid catabolic process GO:0004806--triglyceride lipase activity 1 0.1411 -- 0.1411
GO:0016042--lipid catabolic process GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0004806--triglyceride lipase activity GO:2000280--regulation of root development 0 0.1411 -- 0.0014



Topic #45: GO terms cooccurrence GO terms scores (left -- right)
GO:0070274--res complex GO:0005686--u2 snrnp 1 0.0527 -- 0.0527
GO:0070274--res complex GO:0006406--mrna export from nucleus 1 0.0527 -- 0.0527
GO:0070274--res complex GO:0003723--rna binding 1 0.0527 -- 0.0527
GO:0070274--res complex GO:0071011--precatalytic spliceosome 1 0.0527 -- 0.0527
GO:0005686--u2 snrnp GO:0006406--mrna export from nucleus 1 0.0527 -- 0.0527
GO:0005686--u2 snrnp GO:0003723--rna binding 1 0.0527 -- 0.0527
GO:0005686--u2 snrnp GO:0071011--precatalytic spliceosome 1 0.0527 -- 0.0527
GO:0006406--mrna export from nucleus GO:0003723--rna binding 1 0.0527 -- 0.0527
GO:0006406--mrna export from nucleus GO:0071011--precatalytic spliceosome 1 0.0527 -- 0.0527
GO:0003723--rna binding GO:0071011--precatalytic spliceosome 1 0.0527 -- 0.0527



Topic #56: GO terms cooccurrence GO terms scores (left -- right)
GO:0090305--nucleic acid phosphodiester bond hydrolysis GO:0043137--dna replication, removal of rna primer 1 0.0436 -- 0.0436
GO:0090305--nucleic acid phosphodiester bond hydrolysis GO:0004527--exonuclease activity 1 0.0436 -- 0.0436
GO:0090305--nucleic acid phosphodiester bond hydrolysis GO:0004519--endonuclease activity 1 0.0436 -- 0.0436
GO:0090305--nucleic acid phosphodiester bond hydrolysis GO:0005654--nucleoplasm 1 0.0436 -- 0.0436
GO:0043137--dna replication, removal of rna primer GO:0004527--exonuclease activity 1 0.0436 -- 0.0436
GO:0043137--dna replication, removal of rna primer GO:0004519--endonuclease activity 1 0.0436 -- 0.0436
GO:0043137--dna replication, removal of rna primer GO:0005654--nucleoplasm 1 0.0436 -- 0.0436
GO:0004527--exonuclease activity GO:0004519--endonuclease activity 1 0.0436 -- 0.0436
GO:0004527--exonuclease activity GO:0005654--nucleoplasm 1 0.0436 -- 0.0436
GO:0004519--endonuclease activity GO:0005654--nucleoplasm 1 0.0436 -- 0.0436



Topic #68: GO terms cooccurrence GO terms scores (left -- right)
GO:0009451--rna modification GO:0004519--endonuclease activity 1 0.1411 -- 0.1411
GO:0009451--rna modification GO:0043231--intracellular membrane-bounded organelle 1 0.1411 -- 0.1411
GO:0009451--rna modification GO:0003723--rna binding 1 0.1411 -- 0.1411
GO:0009451--rna modification GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0004519--endonuclease activity GO:0043231--intracellular membrane-bounded organelle 1 0.1411 -- 0.1411
GO:0004519--endonuclease activity GO:0003723--rna binding 1 0.1411 -- 0.1411
GO:0004519--endonuclease activity GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0043231--intracellular membrane-bounded organelle GO:0003723--rna binding 1 0.1411 -- 0.1411
GO:0043231--intracellular membrane-bounded organelle GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0003723--rna binding GO:2000280--regulation of root development 0 0.1411 -- 0.0014



Topic #71: GO terms cooccurrence GO terms scores (left -- right)
GO:0005685--u1 snrnp GO:0006376--mrna splice site selection 1 0.1640 -- 0.1640
GO:0005685--u1 snrnp GO:0003729--mrna binding 1 0.1640 -- 0.1640
GO:0005685--u1 snrnp GO:2000280--regulation of root development 0 0.1640 -- 0.0016
GO:0005685--u1 snrnp GO:0006629--lipid metabolic process 0 0.1640 -- 0.0016
GO:0006376--mrna splice site selection GO:0003729--mrna binding 1 0.1640 -- 0.1640
GO:0006376--mrna splice site selection GO:2000280--regulation of root development 0 0.1640 -- 0.0016
GO:0006376--mrna splice site selection GO:0006629--lipid metabolic process 0 0.1640 -- 0.0016
GO:0003729--mrna binding GO:2000280--regulation of root development 0 0.1640 -- 0.0016
GO:0003729--mrna binding GO:0006629--lipid metabolic process 0 0.1640 -- 0.0016
GO:2000280--regulation of root development GO:0006629--lipid metabolic process 0 0.0016 -- 0.0016



Topic #98: GO terms cooccurrence GO terms scores (left -- right)
GO:0009505--plant-type cell wall GO:0071555--cell wall organization 1 0.1411 -- 0.1411
GO:0009505--plant-type cell wall GO:0052793--pectin acetylesterase activity 1 0.1411 -- 0.1411
GO:0009505--plant-type cell wall GO:0052689--carboxylic ester hydrolase activity 1 0.1411 -- 0.1411
GO:0009505--plant-type cell wall GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0071555--cell wall organization GO:0052793--pectin acetylesterase activity 1 0.1411 -- 0.1411
GO:0071555--cell wall organization GO:0052689--carboxylic ester hydrolase activity 1 0.1411 -- 0.1411
GO:0071555--cell wall organization GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0052793--pectin acetylesterase activity GO:0052689--carboxylic ester hydrolase activity 1 0.1411 -- 0.1411
GO:0052793--pectin acetylesterase activity GO:2000280--regulation of root development 0 0.1411 -- 0.0014
GO:0052689--carboxylic ester hydrolase activity GO:2000280--regulation of root development 0 0.1411 -- 0.0014



Topic #99: GO terms cooccurrence GO terms scores (left -- right)
GO:0046872--metal ion binding GO:0016818--hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1 0.0994 -- 0.0994
GO:0046872--metal ion binding GO:0009164--nucleoside catabolic process 1 0.0994 -- 0.0994
GO:0046872--metal ion binding GO:0005739--mitochondrion 2 0.0994 -- 0.0994
GO:0046872--metal ion binding GO:0005528--fk506 binding 0 0.0994 -- 0.0994
GO:0016818--hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0009164--nucleoside catabolic process 1 0.0994 -- 0.0994
GO:0016818--hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0005739--mitochondrion 1 0.0994 -- 0.0994
GO:0016818--hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0005528--fk506 binding 0 0.0994 -- 0.0994
GO:0009164--nucleoside catabolic process GO:0005739--mitochondrion 1 0.0994 -- 0.0994
GO:0009164--nucleoside catabolic process GO:0005528--fk506 binding 0 0.0994 -- 0.0994
GO:0005739--mitochondrion GO:0005528--fk506 binding 0 0.0994 -- 0.0994