SAR; refined (List of inflorescence genes that SR45-associated transcripts were commonly identified by Salmon and Lasergene v12)

GO	GO frequency	Topics
GO:0005524--atp binding	250	10   (1, 6, 9, 11, 13, 15, 22, 24, 25, 28)
GO:0005829--cytosol	138	8   (1, 5, 19, 20, 21, 25, 26, 27)
GO:0005886--plasma membrane	239	7   (3, 7, 13, 15, 17, 22, 24)
GO:0003677--dna binding	174	4   (0, 11, 16, 18)
GO:0009507--chloroplast	186	4   (1, 4, 12, 26)
GO:0046872--metal ion binding	85	4   (10, 15, 18, 25)
GO:0008270--zinc ion binding	112	3   (0, 19, 23)
GO:0051301--cell division	31	3   (7, 21, 22)
GO:0000166--nucleotide binding	33	2   (10, 14)
GO:0005773--vacuole	34	2   (3, 6)
GO:0006351--transcription, dna-templated	142	2   (0, 16)
GO:0006355--regulation of transcription, dna-templated	176	2   (0, 16)
GO:0007049--cell cycle	23	2   (7, 21)
GO:0007165--signal transduction	51	2   (7, 24)
GO:0009793--embryo development ending in seed dormancy	51	2   (20, 21)
GO:0016567--protein ubiquitination	26	2   (7, 23)
GO:0043565--sequence-specific dna binding	45	2   (0, 16)

GO	GO frequency
GO:0005634--nucleus	964
GO:0005737--cytoplasm	373
GO:0008150--biological_process	334
GO:0003674--molecular_function	276
GO:0005515--protein binding	238
GO:0016021--integral component of membrane	188
GO:0003700--transcription factor activity, sequence-specific DNA binding	118
GO:0003723--RNA binding	99
GO:0016301--kinase activity	99
GO:0016020--membrane	73
GO:0003676--nucleic acid binding	62
GO:0005576--extracellular region	62
GO:0006281--DNA repair	30
GO:0030154--cell differentiation	29
GO:0005622--intracellular	27
GO:0009737--response to abscisic acid	27
GO:0016787--hydrolase activity	27
GO:0005575--cellular_component	26
GO:0005802--trans-Golgi network	24
GO:0007275--multicellular organism development	21
GO:0005215--transporter activity	20
GO:0005789--endoplasmic reticulum membrane	20
GO:0009570--chloroplast stroma	19
GO:0000398--mRNA splicing, via spliceosome	18
GO:0005975--carbohydrate metabolic process	18
GO:0007018--microtubule-based movement	18
GO:0009651--response to salt stress	18
GO:0016569--covalent chromatin modification	18
GO:0016607--nuclear speck	18
GO:0003682--chromatin binding	17
GO:0006457--protein folding	17
GO:0009524--phragmoplast	17
GO:0009555--pollen development	17
GO:0016740--transferase activity	17
GO:0000785--chromatin	16
GO:0009553--embryo sac development	16
GO:0035556--intracellular signal transduction	16
GO:0044212--transcription regulatory region DNA binding	16
GO:0046983--protein dimerization activity	16
GO:0071555--cell wall organization	16
GO:0005777--peroxisome	15
GO:0005871--kinesin complex	15
GO:0009733--response to auxin	15
GO:0009860--pollen tube growth	15
GO:0015031--protein transport	15
GO:0005525--GTP binding	14
GO:0009414--response to water deprivation	14
GO:0009846--pollen germination	14
GO:0045893--positive regulation of transcription, DNA-templated	14
GO:0003824--catalytic activity	13
GO:0005623--cell	13
GO:0005681--spliceosomal complex	13
GO:0005834--heterotrimeric G-protein complex	13
GO:0009409--response to cold	13
GO:0016491--oxidoreductase activity	13
GO:0045944--positive regulation of transcription from RNA polymerase II promoter	13
GO:0004871--signal transducer activity	12
GO:0006357--regulation of transcription from RNA polymerase II promoter	12
GO:0006364--rRNA processing	12
GO:0008289--lipid binding	12
GO:0009611--response to wounding	12
GO:0009790--embryo development	12
GO:0042802--identical protein binding	12
GO:0048046--apoplast	12
GO:0000724--double-strand break repair via homologous recombination	11
GO:0003899--DNA-directed 5'-3' RNA polymerase activity	11
GO:0005819--spindle	11
GO:0006979--response to oxidative stress	11
GO:0008360--regulation of cell shape	11
GO:0009909--regulation of flower development	11
GO:0010090--trichome morphogenesis	11
GO:0042803--protein homodimerization activity	11
GO:0000160--phosphorelay signal transduction system	10
GO:0005887--integral component of plasma membrane	10
GO:0006970--response to osmotic stress	10
GO:0009535--chloroplast thylakoid membrane	10
GO:0009734--auxin-activated signaling pathway	10
GO:0009751--response to salicylic acid	10
GO:0009965--leaf morphogenesis	10
GO:0040008--regulation of growth	10
GO:0043621--protein self-association	10
GO:0051015--actin filament binding	10
GO:0000910--cytokinesis	9
GO:0000981--RNA polymerase II transcription factor activity, sequence-specific DNA binding	9
GO:0003684--damaged DNA binding	9
GO:0004004--ATP-dependent RNA helicase activity	9
GO:0006886--intracellular protein transport	9
GO:0006974--cellular response to DNA damage stimulus	9
GO:0009637--response to blue light	9
GO:0009723--response to ethylene	9
GO:0009791--post-embryonic development	9
GO:0009826--unidimensional cell growth	9
GO:0010008--endosome membrane	9
GO:0016049--cell growth	9
GO:0016192--vesicle-mediated transport	9
GO:0016308--1-phosphatidylinositol-4-phosphate 5-kinase activity	9
GO:0030246--carbohydrate binding	9
GO:0032259--methylation	9
GO:0035091--phosphatidylinositol binding	9
GO:0048366--leaf development	9
GO:0003887--DNA-directed DNA polymerase activity	8
GO:0003924--GTPase activity	8
GO:0005096--GTPase activator activity	8
GO:0006303--double-strand break repair via nonhomologous end joining	8
GO:0006897--endocytosis	8
GO:0007059--chromosome segregation	8
GO:0007623--circadian rhythm	8
GO:0008408--3'-5' exonuclease activity	8
GO:0009416--response to light stimulus	8
GO:0009617--response to bacterium	8
GO:0009736--cytokinin-activated signaling pathway	8
GO:0009817--defense response to fungus, incompatible interaction	8
GO:0009845--seed germination	8
GO:0010150--leaf senescence	8
GO:0016575--histone deacetylation	8
GO:0016874--ligase activity	8
GO:0030551--cyclic nucleotide binding	8
GO:0042147--retrograde transport, endosome to Golgi	8
GO:0046686--response to cadmium ion	8
GO:0051726--regulation of cell cycle	8
GO:0071004--U2-type prespliceosome	8
GO:0000287--magnesium ion binding	7
GO:0001135--transcription factor activity, RNA polymerase II transcription factor recruiting	7
GO:0004402--histone acetyltransferase activity	7
GO:0004702--signal transducer, downstream of receptor, with serine/threonine kinase activity	7
GO:0005216--ion channel activity	7
GO:0005249--voltage-gated potassium channel activity	7
GO:0005635--nuclear envelope	7
GO:0005685--U1 snRNP	7
GO:0006412--translation	7
GO:0006417--regulation of translation	7
GO:0006486--protein glycosylation	7
GO:0007015--actin filament organization	7
GO:0008219--cell death	7
GO:0009630--gravitropism	7
GO:0009658--chloroplast organization	7
GO:0009742--brassinosteroid mediated signaling pathway	7
GO:0009825--multidimensional cell growth	7
GO:0009873--ethylene-activated signaling pathway	7
GO:0010224--response to UV-B	7
GO:0042391--regulation of membrane potential	7
GO:0043231--intracellular membrane-bounded organelle	7
GO:0046982--protein heterodimerization activity	7
GO:0048367--shoot system development	7
GO:0048467--gynoecium development	7
GO:0048481--plant ovule development	7
GO:0000118--histone deacetylase complex	6
GO:0000122--negative regulation of transcription from RNA polymerase II promoter	6
GO:0000148--1,3-beta-D-glucan synthase complex	6
GO:0000156--phosphorelay response regulator activity	6
GO:0003713--transcription coactivator activity	6
GO:0003843--1,3-beta-D-glucan synthase activity	6
GO:0004003--ATP-dependent DNA helicase activity	6
GO:0004407--histone deacetylase activity	6
GO:0004518--nuclease activity	6
GO:0005506--iron ion binding	6
GO:0005669--transcription factor TFIID complex	6
GO:0006075--(1->3)-beta-D-glucan biosynthetic process	6
GO:0006265--DNA topological change	6
GO:0006310--DNA recombination	6
GO:0006338--chromatin remodeling	6
GO:0006342--chromatin silencing	6
GO:0006378--mRNA polyadenylation	6
GO:0006813--potassium ion transport	6
GO:0006888--ER to Golgi vesicle-mediated transport	6
GO:0007010--cytoskeleton organization	6
GO:0007030--Golgi organization	6
GO:0007033--vacuole organization	6
GO:0007064--mitotic sister chromatid cohesion	6
GO:0007131--reciprocal meiotic recombination	6
GO:0007169--transmembrane receptor protein tyrosine kinase signaling pathway	6
GO:0008094--DNA-dependent ATPase activity	6
GO:0009294--DNA mediated transformation	6
GO:0009556--microsporogenesis	6
GO:0009620--response to fungus	6
GO:0009626--plant-type hypersensitive response	6
GO:0009753--response to jasmonic acid	6
GO:0009827--plant-type cell wall modification	6
GO:0009867--jasmonic acid mediated signaling pathway	6
GO:0010286--heat acclimation	6
GO:0010468--regulation of gene expression	6
GO:0016747--transferase activity, transferring acyl groups other than amino-acyl groups	6
GO:0016759--cellulose synthase activity	6
GO:0018024--histone-lysine N-methyltransferase activity	6
GO:0020037--heme binding	6
GO:0030552--cAMP binding	6
GO:0030553--cGMP binding	6
GO:0031047--gene silencing by RNA	6
GO:0032040--small-subunit processome	6
GO:0042393--histone binding	6
GO:0048316--seed development	6
GO:0051017--actin filament bundle assembly	6
GO:0051539--4 iron, 4 sulfur cluster binding	6
GO:0000155--phosphorelay sensor kinase activity	5
GO:0000165--MAPK cascade	5
GO:0000243--commitment complex	5
GO:0000325--plant-type vacuole	5
GO:0000775--chromosome, centromeric region	5
GO:0001106--RNA polymerase II transcription corepressor activity	5
GO:0003697--single-stranded DNA binding	5
GO:0004553--hydrolase activity, hydrolyzing O-glycosyl compounds	5
GO:0004675--transmembrane receptor protein serine/threonine kinase activity	5
GO:0005507--copper ion binding	5
GO:0005694--chromosome	5
GO:0005759--mitochondrial matrix	5
GO:0006284--base-excision repair	5
GO:0006298--mismatch repair	5
GO:0006302--double-strand break repair	5
GO:0006869--lipid transport	5
GO:0006887--exocytosis	5
GO:0007062--sister chromatid cohesion	5
GO:0008152--metabolic process	5
GO:0008234--cysteine-type peptidase activity	5
GO:0008283--cell proliferation	5
GO:0008409--5'-3' exonuclease activity	5
GO:0008536--Ran GTPase binding	5
GO:0009411--response to UV	5
GO:0009585--red, far-red light phototransduction	5
GO:0009615--response to virus	5
GO:0009705--plant-type vacuole membrane	5
GO:0009707--chloroplast outer membrane	5
GO:0009903--chloroplast avoidance movement	5
GO:0009911--positive regulation of flower development	5
GO:0010048--vernalization response	5
GO:0010087--phloem or xylem histogenesis	5
GO:0010119--regulation of stomatal movement	5
GO:0015662--ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5
GO:0016036--cellular response to phosphate starvation	5
GO:0016042--lipid catabolic process	5
GO:0016592--mediator complex	5
GO:0016746--transferase activity, transferring acyl groups	5
GO:0019825--oxygen binding	5
GO:0019898--extrinsic component of membrane	5
GO:0022891--substrate-specific transmembrane transporter activity	5
GO:0031490--chromatin DNA binding	5
GO:0034399--nuclear periphery	5
GO:0035196--production of miRNAs involved in gene silencing by miRNA	5
GO:0040007--growth	5
GO:0040029--regulation of gene expression, epigenetic	5
GO:0044030--regulation of DNA methylation	5
GO:0045087--innate immune response	5
GO:0048193--Golgi vesicle transport	5
GO:0000149--SNARE binding	4
GO:0000175--3'-5'-exoribonuclease activity	4
GO:0000209--protein polyubiquitination	4
GO:0000226--microtubule cytoskeleton organization	4
GO:0000266--mitochondrial fission	4
GO:0000285--1-phosphatidylinositol-3-phosphate 5-kinase activity	4
GO:0000373--Group II intron splicing	4
GO:0000413--protein peptidyl-prolyl isomerization	4
GO:0000723--telomere maintenance	4
GO:0000784--nuclear chromosome, telomeric region	4
GO:0000976--transcription regulatory region sequence-specific DNA binding	4
GO:0000977--RNA polymerase II regulatory region sequence-specific DNA binding	4
GO:0001075--transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly	4
GO:0001708--cell fate specification	4
GO:0003746--translation elongation factor activity	4
GO:0003910--DNA ligase (ATP) activity	4
GO:0004012--phospholipid-translocating ATPase activity	4
GO:0004222--metalloendopeptidase activity	4
GO:0004252--serine-type endopeptidase activity	4
GO:0004559--alpha-mannosidase activity	4
GO:0004565--beta-galactosidase activity	4
GO:0004652--polynucleotide adenylyltransferase activity	4
GO:0004673--protein histidine kinase activity	4
GO:0004683--calmodulin-dependent protein kinase activity	4
GO:0004693--cyclin-dependent protein serine/threonine kinase activity	4
GO:0004709--MAP kinase kinase kinase activity	4
GO:0004806--triglyceride lipase activity	4
GO:0004812--aminoacyl-tRNA ligase activity	4
GO:0005198--structural molecule activity	4
GO:0005200--structural constituent of cytoskeleton	4
GO:0005388--calcium-transporting ATPase activity	4
GO:0005743--mitochondrial inner membrane	4
GO:0005769--early endosome	4
GO:0005885--Arp2/3 protein complex	4
GO:0006273--lagging strand elongation	4
GO:0006349--regulation of gene expression by genetic imprinting	4
GO:0006414--translational elongation	4
GO:0006730--one-carbon metabolic process	4
GO:0006811--ion transport	4
GO:0006890--retrograde vesicle-mediated transport, Golgi to ER	4
GO:0007031--peroxisome organization	4
GO:0008080--N-acetyltransferase activity	4
GO:0008139--nuclear localization sequence binding	4
GO:0008233--peptidase activity	4
GO:0008236--serine-type peptidase activity	4
GO:0008285--negative regulation of cell proliferation	4
GO:0008324--cation transmembrane transporter activity	4
GO:0008559--xenobiotic-transporting ATPase activity	4
GO:0008643--carbohydrate transport	4
GO:0008757--S-adenosylmethionine-dependent methyltransferase activity	4
GO:0009058--biosynthetic process	4
GO:0009330--DNA topoisomerase complex (ATP-hydrolyzing)	4
GO:0009451--RNA modification	4
GO:0009504--cell plate	4
GO:0009574--preprophase band	4
GO:0009624--response to nematode	4
GO:0009636--response to toxic substance	4
GO:0009644--response to high light intensity	4
GO:0009657--plastid organization	4
GO:0009739--response to gibberellin	4
GO:0009880--embryonic pattern specification	4
GO:0009904--chloroplast accumulation movement	4
GO:0009931--calcium-dependent protein serine/threonine kinase activity	4
GO:0010026--trichome differentiation	4
GO:0010027--thylakoid membrane organization	4
GO:0010029--regulation of seed germination	4
GO:0010073--meristem maintenance	4
GO:0010082--regulation of root meristem growth	4
GO:0010118--stomatal movement	4
GO:0010182--sugar mediated signaling pathway	4
GO:0010305--leaf vascular tissue pattern formation	4
GO:0010332--response to gamma radiation	4
GO:0010369--chromocenter	4
GO:0010501--RNA secondary structure unwinding	4
GO:0012505--endomembrane system	4
GO:0015386--potassium:proton antiporter activity	4
GO:0016559--peroxisome fission	4
GO:0016571--histone methylation	4
GO:0016573--histone acetylation	4
GO:0016829--lyase activity	4
GO:0017025--TBP-class protein binding	4
GO:0019900--kinase binding	4
GO:0030136--clathrin-coated vesicle	4
GO:0030307--positive regulation of cell growth	4
GO:0030529--intracellular ribonucleoprotein complex	4
GO:0031201--SNARE complex	4
GO:0031307--integral component of mitochondrial outer membrane	4
GO:0034314--Arp2/3 complex-mediated actin nucleation	4
GO:0042023--DNA endoreduplication	4
GO:0042127--regulation of cell proliferation	4
GO:0042752--regulation of circadian rhythm	4
GO:0042787--protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4
GO:0046856--phosphatidylinositol dephosphorylation	4
GO:0048471--perinuclear region of cytoplasm	4
GO:0048510--regulation of timing of transition from vegetative to reproductive phase	4
GO:0048573--photoperiodism, flowering	4
GO:0048589--developmental growth	4
GO:0048767--root hair elongation	4
GO:0048868--pollen tube development	4
GO:0051028--mRNA transport	4
GO:0051103--DNA ligation involved in DNA repair	4
GO:0051693--actin filament capping	4
GO:0052689--carboxylic ester hydrolase activity	4
GO:0061630--ubiquitin protein ligase activity	4
GO:0071472--cellular response to salt stress	4
GO:0090406--pollen tube	4
GO:1901001--negative regulation of response to salt stress	4
GO:2000377--regulation of reactive oxygen species metabolic process	4
GO:0009295--nucleoid	3
GO:0032502--developmental process	3
GO:0048511--rhythmic process	3
GO:0003006--developmental process involved in reproduction	2
GO:0005615--extracellular space	2
GO:0006950--response to stress	2
GO:0007017--microtubule-based process	2
GO:0007155--cell adhesion	2
GO:0009055--electron carrier activity	2
GO:0017053--transcriptional repressor complex	2
GO:0022857--transmembrane transporter activity	2
GO:0032504--multicellular organism reproduction	2
GO:0000003--reproduction	1
GO:0000150--recombinase activity	1
GO:0000384--first spliceosomal transesterification activity	1
GO:0003735--structural constituent of ribosome	1
GO:0004872--receptor activity	1
GO:0005085--guanyl-nucleotide exchange factor activity	1
GO:0005199--structural constituent of cell wall	1
GO:0005487--nucleocytoplasmic transporter activity	1
GO:0006807--nitrogen compound metabolic process	1
GO:0008265--Mo-molybdopterin cofactor sulfurase activity	1
GO:0009607--response to biotic stimulus	1
GO:0009628--response to abiotic stimulus	1
GO:0016853--isomerase activity	1
GO:0042995--cell projection	1
GO:0043233--organelle lumen	1
GO:0044877--macromolecular complex binding	1
GO:0045177--apical part of cell	1
GO:0050793--regulation of developmental process	1
GO:0060090--binding, bridging	1
GO:0071554--cell wall organization or biogenesis	1
GO:0071944--cell periphery	1

All Topics:

Topic #0:
Score: 0.0877GO:0006355--regulation of transcription, dna-templated
Score: 0.0675GO:0006351--transcription, dna-templated
Score: 0.0611GO:0003677--dna binding
Score: 0.0567GO:0043565--sequence-specific dna binding
Score: 0.0377GO:0008270--zinc ion binding
GO terms cooccurrence

Topic #1:
Score: 0.0642GO:0005524--atp binding
Score: 0.0494GO:0016310--phosphorylation
Score: 0.0331GO:0009507--chloroplast
Score: 0.0250GO:0005829--cytosol
Score: 0.0220GO:0004712--protein serine/threonine/tyrosine kinase activity
GO terms cooccurrence

Topic #2:
Score: 0.0429GO:0005618--cell wall
Score: 0.0422GO:0042742--defense response to bacterium
Score: 0.0267GO:0009408--response to heat
Score: 0.0217GO:0006289--nucleotide-excision repair
Score: 0.0210GO:0009505--plant-type cell wall
GO terms cooccurrence

Topic #3:
Score: 0.0161GO:0005886--plasma membrane
Score: 0.0152GO:0003755--peptidyl-prolyl cis-trans isomerase activity
Score: 0.0152GO:0004439--phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
Score: 0.0152GO:0005528--fk506 binding
Score: 0.0152GO:0005773--vacuole
GO terms cooccurrence

Topic #4:
Score: 0.3399GO:0009507--chloroplast
Score: 0.0384GO:0006508--proteolysis
Score: 0.0365GO:0030048--actin filament-based movement
Score: 0.0365GO:0003774--motor activity
Score: 0.0292GO:0016459--myosin complex
GO terms cooccurrence

Topic #5:
Score: 0.3881GO:0005739--mitochondrion
Score: 0.0265GO:0005730--nucleolus
Score: 0.0164GO:0005509--calcium ion binding
Score: 0.0157GO:0005829--cytosol
Score: 0.0148GO:0006511--ubiquitin-dependent protein catabolic process
GO terms cooccurrence

Topic #6:
Score: 0.1100GO:0005773--vacuole
Score: 0.0757GO:0005774--vacuolar membrane
Score: 0.0320GO:0042626--atpase activity, coupled to transmembrane movement of substances
Score: 0.0277GO:0005524--atp binding
Score: 0.0226GO:0055085--transmembrane transport
GO terms cooccurrence

Topic #7:
Score: 0.0387GO:0051301--cell division
Score: 0.0387GO:0007049--cell cycle
Score: 0.0255GO:0016567--protein ubiquitination
Score: 0.0147GO:0005886--plasma membrane
Score: 0.0126GO:0007165--signal transduction
GO terms cooccurrence

Topic #8:
Score: 0.0368GO:0008565--protein transporter activity
Score: 0.0251GO:0009908--flower development
Score: 0.0250GO:0010228--vegetative to reproductive phase transition of meristem
Score: 0.0246GO:0005643--nuclear pore
Score: 0.0215GO:0031965--nuclear membrane
GO terms cooccurrence

Topic #9:
Score: 0.0839GO:0003777--microtubule motor activity
Score: 0.0671GO:0016887--atpase activity
Score: 0.0643GO:0008017--microtubule binding
Score: 0.0629GO:0005524--atp binding
Score: 0.0587GO:0005874--microtubule
GO terms cooccurrence

Topic #10:
Score: 0.1306GO:0046872--metal ion binding
Score: 0.0303GO:0004721--phosphoprotein phosphatase activity
Score: 0.0269GO:0004722--protein serine/threonine phosphatase activity
Score: 0.0237GO:0000166--nucleotide binding
Score: 0.0210GO:0006260--dna replication
GO terms cooccurrence

Topic #11:
Score: 0.0353GO:0046777--protein autophosphorylation
Score: 0.0293GO:0005524--atp binding
Score: 0.0226GO:0003677--dna binding
Score: 0.0218GO:0009738--abscisic acid-activated signaling pathway
Score: 0.0216GO:0018105--peptidyl-serine phosphorylation
GO terms cooccurrence

Topic #12:
Score: 0.0473GO:0009507--chloroplast
Score: 0.0324GO:0009941--chloroplast envelope
Score: 0.0313GO:0009536--plastid
Score: 0.0313GO:0006413--translational initiation
Score: 0.0313GO:0003743--translation initiation factor activity
GO terms cooccurrence

Topic #13:
Score: 0.1294GO:0005524--atp binding
Score: 0.1190GO:0006468--protein phosphorylation
Score: 0.1001GO:0005886--plasma membrane
Score: 0.0919GO:0004674--protein serine/threonine kinase activity
Score: 0.0883GO:0004672--protein kinase activity
GO terms cooccurrence

Topic #14:
Score: 0.0858GO:0003729--mrna binding
Score: 0.0690GO:0006397--mrna processing
Score: 0.0564GO:0080008--cul4-ring e3 ubiquitin ligase complex
Score: 0.0488GO:0008380--rna splicing
Score: 0.0482GO:0000166--nucleotide binding
GO terms cooccurrence

Topic #15:
Score: 0.2586GO:0009506--plasmodesma
Score: 0.0444GO:0005516--calmodulin binding
Score: 0.0362GO:0005524--atp binding
Score: 0.0185GO:0005886--plasma membrane
Score: 0.0158GO:0046872--metal ion binding
GO terms cooccurrence

Topic #16:
Score: 0.1774GO:0006355--regulation of transcription, dna-templated
Score: 0.1451GO:0006351--transcription, dna-templated
Score: 0.1326GO:0003677--dna binding
Score: 0.0249GO:0043565--sequence-specific dna binding
Score: 0.0193GO:0045892--negative regulation of transcription, dna-templated
GO terms cooccurrence

Topic #17:
Score: 0.2835GO:0005886--plasma membrane
Score: 0.0289GO:0003779--actin binding
Score: 0.0266GO:0005856--cytoskeleton
Score: 0.0200GO:0015144--carbohydrate transmembrane transporter activity
Score: 0.0200GO:0005351--sugar:proton symporter activity
GO terms cooccurrence

Topic #18:
Score: 0.0514GO:0046872--metal ion binding
Score: 0.0350GO:0004519--endonuclease activity
Score: 0.0245GO:0004527--exonuclease activity
Score: 0.0241GO:0003677--dna binding
Score: 0.0210GO:0005654--nucleoplasm
GO terms cooccurrence

Topic #19:
Score: 0.2746GO:0008270--zinc ion binding
Score: 0.0198GO:0005829--cytosol
Score: 0.0164GO:0003712--transcription cofactor activity
Score: 0.0164GO:0060321--acceptance of pollen
Score: 0.0164GO:0000145--exocyst
GO terms cooccurrence

Topic #20:
Score: 0.0213GO:0048364--root development
Score: 0.0207GO:0005829--cytosol
Score: 0.0193GO:0006997--nucleus organization
Score: 0.0160GO:0009793--embryo development ending in seed dormancy
Score: 0.0160GO:0009735--response to cytokinin
GO terms cooccurrence

Topic #21:
Score: 0.0560GO:0009793--embryo development ending in seed dormancy
Score: 0.0220GO:0051301--cell division
Score: 0.0202GO:0005829--cytosol
Score: 0.0158GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity
Score: 0.0158GO:0007049--cell cycle
GO terms cooccurrence

Topic #22:
Score: 0.0351GO:0005524--atp binding
Score: 0.0198GO:0005886--plasma membrane
Score: 0.0194GO:0051321--meiotic cell cycle
Score: 0.0156GO:0051301--cell division
Score: 0.0118GO:0006629--lipid metabolic process
GO terms cooccurrence

Topic #23:
Score: 0.0946GO:0016567--protein ubiquitination
Score: 0.0869GO:0004842--ubiquitin-protein transferase activity
Score: 0.0293GO:0000151--ubiquitin ligase complex
Score: 0.0196GO:0050832--defense response to fungus
Score: 0.0194GO:0008270--zinc ion binding
GO terms cooccurrence

Topic #24:
Score: 0.1565GO:0006952--defense response
Score: 0.1214GO:0007165--signal transduction
Score: 0.0611GO:0043531--adp binding
Score: 0.0450GO:0005886--plasma membrane
Score: 0.0347GO:0005524--atp binding
GO terms cooccurrence

Topic #25:
Score: 0.0335GO:0005524--atp binding
Score: 0.0286GO:0005829--cytosol
Score: 0.0195GO:0046872--metal ion binding
Score: 0.0187GO:0009910--negative regulation of flower development
Score: 0.0152GO:0016779--nucleotidyltransferase activity
GO terms cooccurrence

Topic #26:
Score: 0.0234GO:0009507--chloroplast
Score: 0.0199GO:0005829--cytosol
Score: 0.0166GO:0031969--chloroplast membrane
Score: 0.0133GO:0055114--oxidation-reduction process
Score: 0.0133GO:0010114--response to red light
GO terms cooccurrence

Topic #27:
Score: 0.1071GO:0005829--cytosol
Score: 0.0231GO:0005875--microtubule associated complex
Score: 0.0185GO:0008168--methyltransferase activity
Score: 0.0185GO:0009816--defense response to bacterium, incompatible interaction
Score: 0.0139GO:0080188--rna-directed dna methylation
GO terms cooccurrence

Topic #28:
Score: 0.1260GO:0005524--atp binding
Score: 0.0705GO:0004386--helicase activity
Score: 0.0624GO:0008026--atp-dependent helicase activity
Score: 0.0406GO:0006396--rna processing
Score: 0.0397GO:0006810--transport
GO terms cooccurrence

Topic #29:
Score: 0.1626GO:0005794--golgi apparatus
Score: 0.0535GO:0000139--golgi membrane
Score: 0.0532GO:0005783--endoplasmic reticulum
Score: 0.0488GO:0016757--transferase activity, transferring glycosyl groups
Score: 0.0459GO:0005768--endosome
GO terms cooccurrence