SAR; refined (List of inflorescence genes that SR45-associated transcripts were commonly identified by Salmon and Lasergene v12)




Topic #0: GO terms cooccurrence GO terms scores (left -- right)
GO:0006355--regulation of transcription, dna-templated GO:0006351--transcription, dna-templated 117 0.0877 -- 0.0675
GO:0006355--regulation of transcription, dna-templated GO:0003677--dna binding 94 0.0877 -- 0.0611
GO:0006355--regulation of transcription, dna-templated GO:0043565--sequence-specific dna binding 37 0.0877 -- 0.0567
GO:0006355--regulation of transcription, dna-templated GO:0008270--zinc ion binding 31 0.0877 -- 0.0377
GO:0006351--transcription, dna-templated GO:0003677--dna binding 76 0.0675 -- 0.0611
GO:0006351--transcription, dna-templated GO:0043565--sequence-specific dna binding 32 0.0675 -- 0.0567
GO:0006351--transcription, dna-templated GO:0008270--zinc ion binding 20 0.0675 -- 0.0377
GO:0003677--dna binding GO:0043565--sequence-specific dna binding 28 0.0611 -- 0.0567
GO:0003677--dna binding GO:0008270--zinc ion binding 24 0.0611 -- 0.0377
GO:0043565--sequence-specific dna binding GO:0008270--zinc ion binding 5 0.0567 -- 0.0377



Topic #1: GO terms cooccurrence GO terms scores (left -- right)
GO:0005524--atp binding GO:0016310--phosphorylation 14 0.0642 -- 0.0494
GO:0005524--atp binding GO:0009507--chloroplast 22 0.0642 -- 0.0331
GO:0005524--atp binding GO:0005829--cytosol 34 0.0642 -- 0.0250
GO:0005524--atp binding GO:0004712--protein serine/threonine/tyrosine kinase activity 10 0.0642 -- 0.0220
GO:0016310--phosphorylation GO:0009507--chloroplast 6 0.0494 -- 0.0331
GO:0016310--phosphorylation GO:0005829--cytosol 4 0.0494 -- 0.0250
GO:0016310--phosphorylation GO:0004712--protein serine/threonine/tyrosine kinase activity 0 0.0494 -- 0.0220
GO:0009507--chloroplast GO:0005829--cytosol 9 0.0331 -- 0.0250
GO:0009507--chloroplast GO:0004712--protein serine/threonine/tyrosine kinase activity 0 0.0331 -- 0.0220
GO:0005829--cytosol GO:0004712--protein serine/threonine/tyrosine kinase activity 4 0.0250 -- 0.0220



Topic #2: GO terms cooccurrence GO terms scores (left -- right)
GO:0005618--cell wall GO:0042742--defense response to bacterium 1 0.0429 -- 0.0422
GO:0005618--cell wall GO:0009408--response to heat 0 0.0429 -- 0.0267
GO:0005618--cell wall GO:0006289--nucleotide-excision repair 0 0.0429 -- 0.0217
GO:0005618--cell wall GO:0009505--plant-type cell wall 4 0.0429 -- 0.0210
GO:0042742--defense response to bacterium GO:0009408--response to heat 1 0.0422 -- 0.0267
GO:0042742--defense response to bacterium GO:0006289--nucleotide-excision repair 0 0.0422 -- 0.0217
GO:0042742--defense response to bacterium GO:0009505--plant-type cell wall 0 0.0422 -- 0.0210
GO:0009408--response to heat GO:0006289--nucleotide-excision repair 2 0.0267 -- 0.0217
GO:0009408--response to heat GO:0009505--plant-type cell wall 0 0.0267 -- 0.0210
GO:0006289--nucleotide-excision repair GO:0009505--plant-type cell wall 0 0.0217 -- 0.0210



Topic #3: GO terms cooccurrence GO terms scores (left -- right)
GO:0005886--plasma membrane GO:0003755--peptidyl-prolyl cis-trans isomerase activity 1 0.0161 -- 0.0152
GO:0005886--plasma membrane GO:0004439--phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity 1 0.0161 -- 0.0152
GO:0005886--plasma membrane GO:0005528--fk506 binding 0 0.0161 -- 0.0152
GO:0005886--plasma membrane GO:0005773--vacuole 10 0.0161 -- 0.0152
GO:0003755--peptidyl-prolyl cis-trans isomerase activity GO:0004439--phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity 0 0.0152 -- 0.0152
GO:0003755--peptidyl-prolyl cis-trans isomerase activity GO:0005528--fk506 binding 4 0.0152 -- 0.0152
GO:0003755--peptidyl-prolyl cis-trans isomerase activity GO:0005773--vacuole 1 0.0152 -- 0.0152
GO:0004439--phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity GO:0005528--fk506 binding 0 0.0152 -- 0.0152
GO:0004439--phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity GO:0005773--vacuole 0 0.0152 -- 0.0152
GO:0005528--fk506 binding GO:0005773--vacuole 1 0.0152 -- 0.0152



Topic #4: GO terms cooccurrence GO terms scores (left -- right)
GO:0009507--chloroplast GO:0006508--proteolysis 7 0.3399 -- 0.0384
GO:0009507--chloroplast GO:0030048--actin filament-based movement 1 0.3399 -- 0.0365
GO:0009507--chloroplast GO:0003774--motor activity 0 0.3399 -- 0.0365
GO:0009507--chloroplast GO:0016459--myosin complex 0 0.3399 -- 0.0292
GO:0006508--proteolysis GO:0030048--actin filament-based movement 0 0.0384 -- 0.0365
GO:0006508--proteolysis GO:0003774--motor activity 0 0.0384 -- 0.0365
GO:0006508--proteolysis GO:0016459--myosin complex 0 0.0384 -- 0.0292
GO:0030048--actin filament-based movement GO:0003774--motor activity 15 0.0365 -- 0.0365
GO:0030048--actin filament-based movement GO:0016459--myosin complex 12 0.0365 -- 0.0292
GO:0003774--motor activity GO:0016459--myosin complex 12 0.0365 -- 0.0292



Topic #5: GO terms cooccurrence GO terms scores (left -- right)
GO:0005739--mitochondrion GO:0005730--nucleolus 2 0.3881 -- 0.0265
GO:0005739--mitochondrion GO:0005509--calcium ion binding 2 0.3881 -- 0.0164
GO:0005739--mitochondrion GO:0005829--cytosol 9 0.3881 -- 0.0157
GO:0005739--mitochondrion GO:0006511--ubiquitin-dependent protein catabolic process 1 0.3881 -- 0.0148
GO:0005730--nucleolus GO:0005509--calcium ion binding 0 0.0265 -- 0.0164
GO:0005730--nucleolus GO:0005829--cytosol 8 0.0265 -- 0.0157
GO:0005730--nucleolus GO:0006511--ubiquitin-dependent protein catabolic process 0 0.0265 -- 0.0148
GO:0005509--calcium ion binding GO:0005829--cytosol 2 0.0164 -- 0.0157
GO:0005509--calcium ion binding GO:0006511--ubiquitin-dependent protein catabolic process 1 0.0164 -- 0.0148
GO:0005829--cytosol GO:0006511--ubiquitin-dependent protein catabolic process 2 0.0157 -- 0.0148



Topic #6: GO terms cooccurrence GO terms scores (left -- right)
GO:0005773--vacuole GO:0005774--vacuolar membrane 8 0.1100 -- 0.0757
GO:0005773--vacuole GO:0042626--atpase activity, coupled to transmembrane movement of substances 0 0.1100 -- 0.0320
GO:0005773--vacuole GO:0005524--atp binding 3 0.1100 -- 0.0277
GO:0005773--vacuole GO:0055085--transmembrane transport 1 0.1100 -- 0.0226
GO:0005774--vacuolar membrane GO:0042626--atpase activity, coupled to transmembrane movement of substances 5 0.0757 -- 0.0320
GO:0005774--vacuolar membrane GO:0005524--atp binding 6 0.0757 -- 0.0277
GO:0005774--vacuolar membrane GO:0055085--transmembrane transport 5 0.0757 -- 0.0226
GO:0042626--atpase activity, coupled to transmembrane movement of substances GO:0005524--atp binding 11 0.0320 -- 0.0277
GO:0042626--atpase activity, coupled to transmembrane movement of substances GO:0055085--transmembrane transport 5 0.0320 -- 0.0226
GO:0005524--atp binding GO:0055085--transmembrane transport 5 0.0277 -- 0.0226



Topic #7: GO terms cooccurrence GO terms scores (left -- right)
GO:0051301--cell division GO:0007049--cell cycle 18 0.0387 -- 0.0387
GO:0051301--cell division GO:0016567--protein ubiquitination 6 0.0387 -- 0.0255
GO:0051301--cell division GO:0005886--plasma membrane 6 0.0387 -- 0.0147
GO:0051301--cell division GO:0007165--signal transduction 4 0.0387 -- 0.0126
GO:0007049--cell cycle GO:0016567--protein ubiquitination 6 0.0387 -- 0.0255
GO:0007049--cell cycle GO:0005886--plasma membrane 5 0.0387 -- 0.0147
GO:0007049--cell cycle GO:0007165--signal transduction 4 0.0387 -- 0.0126
GO:0016567--protein ubiquitination GO:0005886--plasma membrane 3 0.0255 -- 0.0147
GO:0016567--protein ubiquitination GO:0007165--signal transduction 3 0.0255 -- 0.0126
GO:0005886--plasma membrane GO:0007165--signal transduction 11 0.0147 -- 0.0126



Topic #8: GO terms cooccurrence GO terms scores (left -- right)
GO:0008565--protein transporter activity GO:0009908--flower development 0 0.0368 -- 0.0251
GO:0008565--protein transporter activity GO:0010228--vegetative to reproductive phase transition of meristem 0 0.0368 -- 0.0250
GO:0008565--protein transporter activity GO:0005643--nuclear pore 7 0.0368 -- 0.0246
GO:0008565--protein transporter activity GO:0031965--nuclear membrane 4 0.0368 -- 0.0215
GO:0009908--flower development GO:0010228--vegetative to reproductive phase transition of meristem 7 0.0251 -- 0.0250
GO:0009908--flower development GO:0005643--nuclear pore 0 0.0251 -- 0.0246
GO:0009908--flower development GO:0031965--nuclear membrane 0 0.0251 -- 0.0215
GO:0010228--vegetative to reproductive phase transition of meristem GO:0005643--nuclear pore 0 0.0250 -- 0.0246
GO:0010228--vegetative to reproductive phase transition of meristem GO:0031965--nuclear membrane 0 0.0250 -- 0.0215
GO:0005643--nuclear pore GO:0031965--nuclear membrane 3 0.0246 -- 0.0215



Topic #9: GO terms cooccurrence GO terms scores (left -- right)
GO:0003777--microtubule motor activity GO:0016887--atpase activity 12 0.0839 -- 0.0671
GO:0003777--microtubule motor activity GO:0008017--microtubule binding 16 0.0839 -- 0.0643
GO:0003777--microtubule motor activity GO:0005524--atp binding 16 0.0839 -- 0.0629
GO:0003777--microtubule motor activity GO:0005874--microtubule 15 0.0839 -- 0.0587
GO:0016887--atpase activity GO:0008017--microtubule binding 10 0.0671 -- 0.0643
GO:0016887--atpase activity GO:0005524--atp binding 21 0.0671 -- 0.0629
GO:0016887--atpase activity GO:0005874--microtubule 10 0.0671 -- 0.0587
GO:0008017--microtubule binding GO:0005524--atp binding 16 0.0643 -- 0.0629
GO:0008017--microtubule binding GO:0005874--microtubule 20 0.0643 -- 0.0587
GO:0005524--atp binding GO:0005874--microtubule 15 0.0629 -- 0.0587



Topic #10: GO terms cooccurrence GO terms scores (left -- right)
GO:0046872--metal ion binding GO:0004721--phosphoprotein phosphatase activity 5 0.1306 -- 0.0303
GO:0046872--metal ion binding GO:0004722--protein serine/threonine phosphatase activity 6 0.1306 -- 0.0269
GO:0046872--metal ion binding GO:0000166--nucleotide binding 5 0.1306 -- 0.0237
GO:0046872--metal ion binding GO:0006260--dna replication 6 0.1306 -- 0.0210
GO:0004721--phosphoprotein phosphatase activity GO:0004722--protein serine/threonine phosphatase activity 5 0.0303 -- 0.0269
GO:0004721--phosphoprotein phosphatase activity GO:0000166--nucleotide binding 0 0.0303 -- 0.0237
GO:0004721--phosphoprotein phosphatase activity GO:0006260--dna replication 0 0.0303 -- 0.0210
GO:0004722--protein serine/threonine phosphatase activity GO:0000166--nucleotide binding 1 0.0269 -- 0.0237
GO:0004722--protein serine/threonine phosphatase activity GO:0006260--dna replication 0 0.0269 -- 0.0210
GO:0000166--nucleotide binding GO:0006260--dna replication 3 0.0237 -- 0.0210



Topic #11: GO terms cooccurrence GO terms scores (left -- right)
GO:0046777--protein autophosphorylation GO:0005524--atp binding 14 0.0353 -- 0.0293
GO:0046777--protein autophosphorylation GO:0003677--dna binding 1 0.0353 -- 0.0226
GO:0046777--protein autophosphorylation GO:0009738--abscisic acid-activated signaling pathway 5 0.0353 -- 0.0218
GO:0046777--protein autophosphorylation GO:0018105--peptidyl-serine phosphorylation 6 0.0353 -- 0.0216
GO:0005524--atp binding GO:0003677--dna binding 29 0.0293 -- 0.0226
GO:0005524--atp binding GO:0009738--abscisic acid-activated signaling pathway 7 0.0293 -- 0.0218
GO:0005524--atp binding GO:0018105--peptidyl-serine phosphorylation 9 0.0293 -- 0.0216
GO:0003677--dna binding GO:0009738--abscisic acid-activated signaling pathway 2 0.0226 -- 0.0218
GO:0003677--dna binding GO:0018105--peptidyl-serine phosphorylation 0 0.0226 -- 0.0216
GO:0009738--abscisic acid-activated signaling pathway GO:0018105--peptidyl-serine phosphorylation 4 0.0218 -- 0.0216



Topic #12: GO terms cooccurrence GO terms scores (left -- right)
GO:0009507--chloroplast GO:0009941--chloroplast envelope 14 0.0473 -- 0.0324
GO:0009507--chloroplast GO:0009536--plastid 9 0.0473 -- 0.0313
GO:0009507--chloroplast GO:0006413--translational initiation 1 0.0473 -- 0.0313
GO:0009507--chloroplast GO:0003743--translation initiation factor activity 1 0.0473 -- 0.0313
GO:0009941--chloroplast envelope GO:0009536--plastid 5 0.0324 -- 0.0313
GO:0009941--chloroplast envelope GO:0006413--translational initiation 0 0.0324 -- 0.0313
GO:0009941--chloroplast envelope GO:0003743--translation initiation factor activity 0 0.0324 -- 0.0313
GO:0009536--plastid GO:0006413--translational initiation 0 0.0313 -- 0.0313
GO:0009536--plastid GO:0003743--translation initiation factor activity 0 0.0313 -- 0.0313
GO:0006413--translational initiation GO:0003743--translation initiation factor activity 11 0.0313 -- 0.0313



Topic #13: GO terms cooccurrence GO terms scores (left -- right)
GO:0005524--atp binding GO:0006468--protein phosphorylation 62 0.1294 -- 0.1190
GO:0005524--atp binding GO:0005886--plasma membrane 63 0.1294 -- 0.1001
GO:0005524--atp binding GO:0004674--protein serine/threonine kinase activity 48 0.1294 -- 0.0919
GO:0005524--atp binding GO:0004672--protein kinase activity 43 0.1294 -- 0.0883
GO:0006468--protein phosphorylation GO:0005886--plasma membrane 37 0.1190 -- 0.1001
GO:0006468--protein phosphorylation GO:0004674--protein serine/threonine kinase activity 38 0.1190 -- 0.0919
GO:0006468--protein phosphorylation GO:0004672--protein kinase activity 41 0.1190 -- 0.0883
GO:0005886--plasma membrane GO:0004674--protein serine/threonine kinase activity 27 0.1001 -- 0.0919
GO:0005886--plasma membrane GO:0004672--protein kinase activity 23 0.1001 -- 0.0883
GO:0004674--protein serine/threonine kinase activity GO:0004672--protein kinase activity 28 0.0919 -- 0.0883



Topic #14: GO terms cooccurrence GO terms scores (left -- right)
GO:0003729--mrna binding GO:0006397--mrna processing 6 0.0858 -- 0.0690
GO:0003729--mrna binding GO:0080008--cul4-ring e3 ubiquitin ligase complex 0 0.0858 -- 0.0564
GO:0003729--mrna binding GO:0008380--rna splicing 3 0.0858 -- 0.0488
GO:0003729--mrna binding GO:0000166--nucleotide binding 0 0.0858 -- 0.0482
GO:0006397--mrna processing GO:0080008--cul4-ring e3 ubiquitin ligase complex 1 0.0690 -- 0.0564
GO:0006397--mrna processing GO:0008380--rna splicing 11 0.0690 -- 0.0488
GO:0006397--mrna processing GO:0000166--nucleotide binding 1 0.0690 -- 0.0482
GO:0080008--cul4-ring e3 ubiquitin ligase complex GO:0008380--rna splicing 0 0.0564 -- 0.0488
GO:0080008--cul4-ring e3 ubiquitin ligase complex GO:0000166--nucleotide binding 13 0.0564 -- 0.0482
GO:0008380--rna splicing GO:0000166--nucleotide binding 0 0.0488 -- 0.0482



Topic #15: GO terms cooccurrence GO terms scores (left -- right)
GO:0009506--plasmodesma GO:0005516--calmodulin binding 3 0.2586 -- 0.0444
GO:0009506--plasmodesma GO:0005524--atp binding 17 0.2586 -- 0.0362
GO:0009506--plasmodesma GO:0005886--plasma membrane 22 0.2586 -- 0.0185
GO:0009506--plasmodesma GO:0046872--metal ion binding 3 0.2586 -- 0.0158
GO:0005516--calmodulin binding GO:0005524--atp binding 12 0.0444 -- 0.0362
GO:0005516--calmodulin binding GO:0005886--plasma membrane 15 0.0444 -- 0.0185
GO:0005516--calmodulin binding GO:0046872--metal ion binding 3 0.0444 -- 0.0158
GO:0005524--atp binding GO:0005886--plasma membrane 63 0.0362 -- 0.0185
GO:0005524--atp binding GO:0046872--metal ion binding 22 0.0362 -- 0.0158
GO:0005886--plasma membrane GO:0046872--metal ion binding 6 0.0185 -- 0.0158



Topic #16: GO terms cooccurrence GO terms scores (left -- right)
GO:0006355--regulation of transcription, dna-templated GO:0006351--transcription, dna-templated 117 0.1774 -- 0.1451
GO:0006355--regulation of transcription, dna-templated GO:0003677--dna binding 94 0.1774 -- 0.1326
GO:0006355--regulation of transcription, dna-templated GO:0043565--sequence-specific dna binding 37 0.1774 -- 0.0249
GO:0006355--regulation of transcription, dna-templated GO:0045892--negative regulation of transcription, dna-templated 8 0.1774 -- 0.0193
GO:0006351--transcription, dna-templated GO:0003677--dna binding 76 0.1451 -- 0.1326
GO:0006351--transcription, dna-templated GO:0043565--sequence-specific dna binding 32 0.1451 -- 0.0249
GO:0006351--transcription, dna-templated GO:0045892--negative regulation of transcription, dna-templated 14 0.1451 -- 0.0193
GO:0003677--dna binding GO:0043565--sequence-specific dna binding 28 0.1326 -- 0.0249
GO:0003677--dna binding GO:0045892--negative regulation of transcription, dna-templated 8 0.1326 -- 0.0193
GO:0043565--sequence-specific dna binding GO:0045892--negative regulation of transcription, dna-templated 6 0.0249 -- 0.0193



Topic #17: GO terms cooccurrence GO terms scores (left -- right)
GO:0005886--plasma membrane GO:0003779--actin binding 3 0.2835 -- 0.0289
GO:0005886--plasma membrane GO:0005856--cytoskeleton 6 0.2835 -- 0.0266
GO:0005886--plasma membrane GO:0015144--carbohydrate transmembrane transporter activity 7 0.2835 -- 0.0200
GO:0005886--plasma membrane GO:0005351--sugar:proton symporter activity 7 0.2835 -- 0.0200
GO:0003779--actin binding GO:0005856--cytoskeleton 6 0.0289 -- 0.0266
GO:0003779--actin binding GO:0015144--carbohydrate transmembrane transporter activity 0 0.0289 -- 0.0200
GO:0003779--actin binding GO:0005351--sugar:proton symporter activity 0 0.0289 -- 0.0200
GO:0005856--cytoskeleton GO:0015144--carbohydrate transmembrane transporter activity 0 0.0266 -- 0.0200
GO:0005856--cytoskeleton GO:0005351--sugar:proton symporter activity 0 0.0266 -- 0.0200
GO:0015144--carbohydrate transmembrane transporter activity GO:0005351--sugar:proton symporter activity 9 0.0200 -- 0.0200



Topic #18: GO terms cooccurrence GO terms scores (left -- right)
GO:0046872--metal ion binding GO:0004519--endonuclease activity 8 0.0514 -- 0.0350
GO:0046872--metal ion binding GO:0004527--exonuclease activity 6 0.0514 -- 0.0245
GO:0046872--metal ion binding GO:0003677--dna binding 21 0.0514 -- 0.0241
GO:0046872--metal ion binding GO:0005654--nucleoplasm 1 0.0514 -- 0.0210
GO:0004519--endonuclease activity GO:0004527--exonuclease activity 6 0.0350 -- 0.0245
GO:0004519--endonuclease activity GO:0003677--dna binding 2 0.0350 -- 0.0241
GO:0004519--endonuclease activity GO:0005654--nucleoplasm 1 0.0350 -- 0.0210
GO:0004527--exonuclease activity GO:0003677--dna binding 2 0.0245 -- 0.0241
GO:0004527--exonuclease activity GO:0005654--nucleoplasm 1 0.0245 -- 0.0210
GO:0003677--dna binding GO:0005654--nucleoplasm 2 0.0241 -- 0.0210



Topic #19: GO terms cooccurrence GO terms scores (left -- right)
GO:0008270--zinc ion binding GO:0005829--cytosol 2 0.2746 -- 0.0198
GO:0008270--zinc ion binding GO:0003712--transcription cofactor activity 4 0.2746 -- 0.0164
GO:0008270--zinc ion binding GO:0060321--acceptance of pollen 0 0.2746 -- 0.0164
GO:0008270--zinc ion binding GO:0000145--exocyst 0 0.2746 -- 0.0164
GO:0005829--cytosol GO:0003712--transcription cofactor activity 0 0.0198 -- 0.0164
GO:0005829--cytosol GO:0060321--acceptance of pollen 4 0.0198 -- 0.0164
GO:0005829--cytosol GO:0000145--exocyst 4 0.0198 -- 0.0164
GO:0003712--transcription cofactor activity GO:0060321--acceptance of pollen 0 0.0164 -- 0.0164
GO:0003712--transcription cofactor activity GO:0000145--exocyst 0 0.0164 -- 0.0164
GO:0060321--acceptance of pollen GO:0000145--exocyst 5 0.0164 -- 0.0164



Topic #20: GO terms cooccurrence GO terms scores (left -- right)
GO:0048364--root development GO:0005829--cytosol 1 0.0213 -- 0.0207
GO:0048364--root development GO:0006997--nucleus organization 0 0.0213 -- 0.0193
GO:0048364--root development GO:0009793--embryo development ending in seed dormancy 1 0.0213 -- 0.0160
GO:0048364--root development GO:0009735--response to cytokinin 3 0.0213 -- 0.0160
GO:0005829--cytosol GO:0006997--nucleus organization 1 0.0207 -- 0.0193
GO:0005829--cytosol GO:0009793--embryo development ending in seed dormancy 8 0.0207 -- 0.0160
GO:0005829--cytosol GO:0009735--response to cytokinin 1 0.0207 -- 0.0160
GO:0006997--nucleus organization GO:0009793--embryo development ending in seed dormancy 0 0.0193 -- 0.0160
GO:0006997--nucleus organization GO:0009735--response to cytokinin 0 0.0193 -- 0.0160
GO:0009793--embryo development ending in seed dormancy GO:0009735--response to cytokinin 0 0.0160 -- 0.0160



Topic #21: GO terms cooccurrence GO terms scores (left -- right)
GO:0009793--embryo development ending in seed dormancy GO:0051301--cell division 2 0.0560 -- 0.0220
GO:0009793--embryo development ending in seed dormancy GO:0005829--cytosol 8 0.0560 -- 0.0202
GO:0009793--embryo development ending in seed dormancy GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity 0 0.0560 -- 0.0158
GO:0009793--embryo development ending in seed dormancy GO:0007049--cell cycle 1 0.0560 -- 0.0158
GO:0051301--cell division GO:0005829--cytosol 6 0.0220 -- 0.0202
GO:0051301--cell division GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity 6 0.0220 -- 0.0158
GO:0051301--cell division GO:0007049--cell cycle 18 0.0220 -- 0.0158
GO:0005829--cytosol GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity 0 0.0202 -- 0.0158
GO:0005829--cytosol GO:0007049--cell cycle 5 0.0202 -- 0.0158
GO:0016538--cyclin-dependent protein serine/threonine kinase regulator activity GO:0007049--cell cycle 5 0.0158 -- 0.0158



Topic #22: GO terms cooccurrence GO terms scores (left -- right)
GO:0005524--atp binding GO:0005886--plasma membrane 63 0.0351 -- 0.0198
GO:0005524--atp binding GO:0051321--meiotic cell cycle 5 0.0351 -- 0.0194
GO:0005524--atp binding GO:0051301--cell division 6 0.0351 -- 0.0156
GO:0005524--atp binding GO:0006629--lipid metabolic process 0 0.0351 -- 0.0118
GO:0005886--plasma membrane GO:0051321--meiotic cell cycle 0 0.0198 -- 0.0194
GO:0005886--plasma membrane GO:0051301--cell division 6 0.0198 -- 0.0156
GO:0005886--plasma membrane GO:0006629--lipid metabolic process 4 0.0198 -- 0.0118
GO:0051321--meiotic cell cycle GO:0051301--cell division 3 0.0194 -- 0.0156
GO:0051321--meiotic cell cycle GO:0006629--lipid metabolic process 0 0.0194 -- 0.0118
GO:0051301--cell division GO:0006629--lipid metabolic process 0 0.0156 -- 0.0118



Topic #23: GO terms cooccurrence GO terms scores (left -- right)
GO:0016567--protein ubiquitination GO:0004842--ubiquitin-protein transferase activity 15 0.0946 -- 0.0869
GO:0016567--protein ubiquitination GO:0000151--ubiquitin ligase complex 6 0.0946 -- 0.0293
GO:0016567--protein ubiquitination GO:0050832--defense response to fungus 0 0.0946 -- 0.0196
GO:0016567--protein ubiquitination GO:0008270--zinc ion binding 6 0.0946 -- 0.0194
GO:0004842--ubiquitin-protein transferase activity GO:0000151--ubiquitin ligase complex 6 0.0869 -- 0.0293
GO:0004842--ubiquitin-protein transferase activity GO:0050832--defense response to fungus 0 0.0869 -- 0.0196
GO:0004842--ubiquitin-protein transferase activity GO:0008270--zinc ion binding 9 0.0869 -- 0.0194
GO:0000151--ubiquitin ligase complex GO:0050832--defense response to fungus 0 0.0293 -- 0.0196
GO:0000151--ubiquitin ligase complex GO:0008270--zinc ion binding 2 0.0293 -- 0.0194
GO:0050832--defense response to fungus GO:0008270--zinc ion binding 0 0.0196 -- 0.0194



Topic #24: GO terms cooccurrence GO terms scores (left -- right)
GO:0006952--defense response GO:0007165--signal transduction 23 0.1565 -- 0.1214
GO:0006952--defense response GO:0043531--adp binding 22 0.1565 -- 0.0611
GO:0006952--defense response GO:0005886--plasma membrane 10 0.1565 -- 0.0450
GO:0006952--defense response GO:0005524--atp binding 16 0.1565 -- 0.0347
GO:0007165--signal transduction GO:0043531--adp binding 19 0.1214 -- 0.0611
GO:0007165--signal transduction GO:0005886--plasma membrane 11 0.1214 -- 0.0450
GO:0007165--signal transduction GO:0005524--atp binding 13 0.1214 -- 0.0347
GO:0043531--adp binding GO:0005886--plasma membrane 3 0.0611 -- 0.0450
GO:0043531--adp binding GO:0005524--atp binding 11 0.0611 -- 0.0347
GO:0005886--plasma membrane GO:0005524--atp binding 63 0.0450 -- 0.0347



Topic #25: GO terms cooccurrence GO terms scores (left -- right)
GO:0005524--atp binding GO:0005829--cytosol 34 0.0335 -- 0.0286
GO:0005524--atp binding GO:0046872--metal ion binding 22 0.0335 -- 0.0195
GO:0005524--atp binding GO:0009910--negative regulation of flower development 1 0.0335 -- 0.0187
GO:0005524--atp binding GO:0016779--nucleotidyltransferase activity 3 0.0335 -- 0.0152
GO:0005829--cytosol GO:0046872--metal ion binding 10 0.0286 -- 0.0195
GO:0005829--cytosol GO:0009910--negative regulation of flower development 2 0.0286 -- 0.0187
GO:0005829--cytosol GO:0016779--nucleotidyltransferase activity 0 0.0286 -- 0.0152
GO:0046872--metal ion binding GO:0009910--negative regulation of flower development 2 0.0195 -- 0.0187
GO:0046872--metal ion binding GO:0016779--nucleotidyltransferase activity 3 0.0195 -- 0.0152
GO:0009910--negative regulation of flower development GO:0016779--nucleotidyltransferase activity 0 0.0187 -- 0.0152



Topic #26: GO terms cooccurrence GO terms scores (left -- right)
GO:0009507--chloroplast GO:0005829--cytosol 9 0.0234 -- 0.0199
GO:0009507--chloroplast GO:0031969--chloroplast membrane 3 0.0234 -- 0.0166
GO:0009507--chloroplast GO:0055114--oxidation-reduction process 8 0.0234 -- 0.0133
GO:0009507--chloroplast GO:0010114--response to red light 2 0.0234 -- 0.0133
GO:0005829--cytosol GO:0031969--chloroplast membrane 0 0.0199 -- 0.0166
GO:0005829--cytosol GO:0055114--oxidation-reduction process 2 0.0199 -- 0.0133
GO:0005829--cytosol GO:0010114--response to red light 0 0.0199 -- 0.0133
GO:0031969--chloroplast membrane GO:0055114--oxidation-reduction process 1 0.0166 -- 0.0133
GO:0031969--chloroplast membrane GO:0010114--response to red light 1 0.0166 -- 0.0133
GO:0055114--oxidation-reduction process GO:0010114--response to red light 1 0.0133 -- 0.0133



Topic #27: GO terms cooccurrence GO terms scores (left -- right)
GO:0005829--cytosol GO:0005875--microtubule associated complex 0 0.1071 -- 0.0231
GO:0005829--cytosol GO:0008168--methyltransferase activity 2 0.1071 -- 0.0185
GO:0005829--cytosol GO:0009816--defense response to bacterium, incompatible interaction 0 0.1071 -- 0.0185
GO:0005829--cytosol GO:0080188--rna-directed dna methylation 1 0.1071 -- 0.0139
GO:0005875--microtubule associated complex GO:0008168--methyltransferase activity 0 0.0231 -- 0.0185
GO:0005875--microtubule associated complex GO:0009816--defense response to bacterium, incompatible interaction 0 0.0231 -- 0.0185
GO:0005875--microtubule associated complex GO:0080188--rna-directed dna methylation 0 0.0231 -- 0.0139
GO:0008168--methyltransferase activity GO:0009816--defense response to bacterium, incompatible interaction 0 0.0185 -- 0.0185
GO:0008168--methyltransferase activity GO:0080188--rna-directed dna methylation 1 0.0185 -- 0.0139
GO:0009816--defense response to bacterium, incompatible interaction GO:0080188--rna-directed dna methylation 0 0.0185 -- 0.0139



Topic #28: GO terms cooccurrence GO terms scores (left -- right)
GO:0005524--atp binding GO:0004386--helicase activity 25 0.1260 -- 0.0705
GO:0005524--atp binding GO:0008026--atp-dependent helicase activity 19 0.1260 -- 0.0624
GO:0005524--atp binding GO:0006396--rna processing 2 0.1260 -- 0.0406
GO:0005524--atp binding GO:0006810--transport 3 0.1260 -- 0.0397
GO:0004386--helicase activity GO:0008026--atp-dependent helicase activity 7 0.0705 -- 0.0624
GO:0004386--helicase activity GO:0006396--rna processing 2 0.0705 -- 0.0406
GO:0004386--helicase activity GO:0006810--transport 0 0.0705 -- 0.0397
GO:0008026--atp-dependent helicase activity GO:0006396--rna processing 2 0.0624 -- 0.0406
GO:0008026--atp-dependent helicase activity GO:0006810--transport 0 0.0624 -- 0.0397
GO:0006396--rna processing GO:0006810--transport 1 0.0406 -- 0.0397



Topic #29: GO terms cooccurrence GO terms scores (left -- right)
GO:0005794--golgi apparatus GO:0000139--golgi membrane 19 0.1626 -- 0.0535
GO:0005794--golgi apparatus GO:0005783--endoplasmic reticulum 6 0.1626 -- 0.0532
GO:0005794--golgi apparatus GO:0016757--transferase activity, transferring glycosyl groups 15 0.1626 -- 0.0488
GO:0005794--golgi apparatus GO:0005768--endosome 17 0.1626 -- 0.0459
GO:0000139--golgi membrane GO:0005783--endoplasmic reticulum 2 0.0535 -- 0.0532
GO:0000139--golgi membrane GO:0016757--transferase activity, transferring glycosyl groups 9 0.0535 -- 0.0488
GO:0000139--golgi membrane GO:0005768--endosome 7 0.0535 -- 0.0459
GO:0005783--endoplasmic reticulum GO:0016757--transferase activity, transferring glycosyl groups 1 0.0532 -- 0.0488
GO:0005783--endoplasmic reticulum GO:0005768--endosome 3 0.0532 -- 0.0459
GO:0016757--transferase activity, transferring glycosyl groups GO:0005768--endosome 5 0.0488 -- 0.0459